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Report for CCDS38426.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38426.1 Public Mus musculus 3 Ndufc1 23 108 98 CCDS HistoryNCBI Gene:66377Re-query CCDS DB by CCDS ID:38426.1Re-query CCDS DB by GeneID:66377See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38426.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000038108.11 ENSMUSP00000038463.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000038108.11Link to Ensembl Protein Viewer:ENSMUSP00000038463.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000038108Re-query CCDS DB by Protein ID:ENSMUSP00000038463
Original member Current member EBI ENSMUST00000193279.1 ENSMUSP00000141933.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000193279.1Link to Ensembl Protein Viewer:ENSMUSP00000141933.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000193279Re-query CCDS DB by Protein ID:ENSMUSP00000141933
Original member NCBI NM_025523.1 NP_079799.1 Updated not alive Link to Nucleotide Sequence:NM_025523.1Link to Protein Sequence:NP_079799.1Re-query CCDS DB by Nucleotide ID:NM_025523Re-query CCDS DB by Protein ID:NP_079799
Current member NCBI NM_025523.2 NP_079799.1 Accepted alive Link to Nucleotide Sequence:NM_025523.2Link to Protein Sequence:NP_079799.1Re-query CCDS DB by Nucleotide ID:NM_025523Re-query CCDS DB by Protein ID:NP_079799Link to BLAST:NP_079799.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079799.1 76 Q9CQY9 76 100% 0 0

Chromosomal Locations for CCDS 38426.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 51407353 51407412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 51408145 51408248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 51408864 51408930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (231 nt):
ATGGCGCCGTCCGTAGTGCTGCGCTCGTTTTCGCGGCTGCTGGCCCCCGCCCGGCTGCCGAGCTGCTCTT
CAACACGGTCGAAGTTCTATGTCCGGGAGCCAGTCAATGCCAAACCTAACTGGTTGGCAGTTGGACTGTC
CGTGGGCGCCTCGGTTTTCATGTGGATTTATCTCATCCAAACACACAATGAAGATGTTTTGGAGTATAAA
AGAAGAAATGGATTGGAATAA

Translation (76 aa):
MAPSVVLRSFSRLLAPARLPSCSSTRSKFYVREPVNAKPNWLAVGLSVGASVFMWIYLIQTHNEDVLEYK
RRNGLE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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