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Report for CCDS38386.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38386.1 Public Mus musculus 3 Tpd52 23 108 98 CCDS HistoryNCBI Gene:21985Re-query CCDS DB by CCDS ID:38386.1Re-query CCDS DB by GeneID:21985See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38386.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000091354.11 ENSMUSP00000088913.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000091354.11Link to Ensembl Protein Viewer:ENSMUSP00000088913.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000091354Re-query CCDS DB by Protein ID:ENSMUSP00000088913
Original member NCBI NM_001025262.2 NP_001020433.1 Updated not alive Link to Nucleotide Sequence:NM_001025262.2Link to Protein Sequence:NP_001020433.1Re-query CCDS DB by Nucleotide ID:NM_001025262Re-query CCDS DB by Protein ID:NP_001020433
Current member NCBI NM_001025262.3 NP_001020433.1 Accepted alive Link to Nucleotide Sequence:NM_001025262.3Link to Protein Sequence:NP_001020433.1Re-query CCDS DB by Nucleotide ID:NM_001025262Re-query CCDS DB by Protein ID:NP_001020433Link to BLAST:NP_001020433.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001020433.1 224 Q62393-1 224 100% 0 0

Chromosomal Locations for CCDS 38386.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 8931052 8931174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 8934992 8935040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 8944611 8944712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 8947481 8947629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 8953684 8953799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 8963847 8963982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (675 nt):
ATGGAGTGCAGAGATATGGAGTTGGCTGATGATTACCAATCCCCCTTTGATTTTGATTCTGGAGTGAACA
AGAACTACCTCTACCTCTCTCCAAGCGGGAACACCTCGCCGCCTGGTTCACCTACACAGAACGTTGGTCT
GCTGAAGACAGAGCCGGTGGCCGAGGAAGGAGAGGATGCTGTTACCATGCTCAGTGCTCCAGAGGCGCTG
ACGGAAGAGGAGCAAGAGGAGCTGAGGCGGGAGCTTACTAAGGTGGAAGAAGAAATCCAGACTCTGTCCC
AAGTATTGGCCGCAAAAGAGAAGCATCTCGCCGAGCTCAAGCGGAAGCTCGGCATCTCCTCGCTTCAGGA
GTTCAAGCAGAACATTGCCAAAGGGTGGCAAGACGTGACGGCAACCAATGCATACAAGAAGACCTCTGAA
ACTCTATCGCAAGCTGGGCAGAAGGCCTCCGCTGCATTTTCATCGGTTGGCTCAGTCATCACCAAAAAGC
TGGAAGACGTGAAAAACTCCCCAACTTTCAAGTCATTTGAAGAAAAAGTTGAAAATTTAAAGTCTAAAGT
AGGAGGAGCCAAGCCTGCTGGCGGCGATTTTGGAGAAGTCCTGAATTCCACAGCCAACGCTACCAGTACC
ATGACCACAGAGCCTCCTCCAGAACAGATGACAGAGAGCCCCTGA

Translation (224 aa):
MECRDMELADDYQSPFDFDSGVNKNYLYLSPSGNTSPPGSPTQNVGLLKTEPVAEEGEDAVTMLSAPEAL
TEEEQEELRRELTKVEEEIQTLSQVLAAKEKHLAELKRKLGISSLQEFKQNIAKGWQDVTATNAYKKTSE
TLSQAGQKASAAFSSVGSVITKKLEDVKNSPTFKSFEEKVENLKSKVGGAKPAGGDFGEVLNSTANATST
MTTEPPPEQMTESP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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