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Report for CCDS38230.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38230.1 Public Mus musculus 2 Secisbp2l 23 108 98 CCDS HistoryNCBI Gene:70354Re-query CCDS DB by CCDS ID:38230.1Re-query CCDS DB by GeneID:70354See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38230.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000053699.12 ENSMUSP00000055772.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000053699.12Link to Ensembl Protein Viewer:ENSMUSP00000055772.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000053699Re-query CCDS DB by Protein ID:ENSMUSP00000055772
Original member Current member NCBI NM_177608.3 NP_808276.2 Accepted alive Link to Nucleotide Sequence:NM_177608.3Link to Protein Sequence:NP_808276.2Re-query CCDS DB by Nucleotide ID:NM_177608Re-query CCDS DB by Protein ID:NP_808276Link to BLAST:NP_808276.2

Chromosomal Locations for CCDS 38230.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 125740265 125740917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 125743814 125744033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 125745797 125745951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 125747385 125747605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 125750279 125750441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 125751729 125751861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 125752814 125752980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 125757194 125757335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 125757432 125757599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 125758166 125758246 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 125760272 125760406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 125767375 125767490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 125767809 125767833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 125768107 125768333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 125771409 125771544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 125773176 125773500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 125775553 125775731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 125782599 125782622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3270 nt):
ATGGACCGAGCGCCGGCCGAGCAGAATGTGAAGCTCTCCGCTGAAGTGGAGCCGTTCGTCCCCCAGAAGA
AGAATCTGGATGCCTTTGTTCTCCCCATGGCTCTCCCCAGTGATAATGGAAGTGTTTCCGGGGTGGAGCC
AACTCCAATCCCTAGTTACCTGATTACTTGCTACCCGTTTGTTCAGGAAAACCAGTCCAATAGACAATTT
CCTTTATATAACAACGATATACGATGGCAGCAGCCCAGCCCAAGTCCTACCGGACCCTACCTTGCCTACC
CCATTATATCTGCTCAGCCACCTGTTTCCACAGAGTACACCTATTACCAGCTGATGCCAGCACCCTGTGC
CCAAGTTATGGGCTTCTATCATCCTTTTCCTACCCCTTACTCCAGCACCTTCCAGGCTGCAAACACTGTC
AATGCCATAAGCACAGAATGCACCGAGCGTCCAAATCAGCTGGGGCAGGCCTTCCCGCTGTCCAGTCATC
GGAGCAGGAATGGTAACAGAGGGCCAGTGGTGCCAAAACCGCAGCTTTTACAACAACATATAAAAAACAA
AAGACCACAGGTGAAGAATGTGGCTACTCAGAAAGAAACAAGCGCAACAGGTCCTGATAGCCGATCAAAA
ATTGTGCTTCTGGTAGATGCTTCACAGCAAACTGATTTCCCATCAGACATCGCTAATAAGTCTCTCTCGG
AGAGCACAGCCACAATGCTCTGGAAAGCCAAAGGCAGGAGGAGAAGAGCGTCCCACCCTGCTGTAGAGTC
CTCCAGTGAGCAGGGCGCCAGTGAAGCTGACATCGACAGCGACAGCGGCTACTGCAGTCCCAAGCACAAC
AACCAGTCTGCGCCAGGGGCTCTGCGCGACCCTGCCTCTGGGACCATGAACCGTTTGGAGTCATCGGGCT
GTTCAGGTGGTGTAAACTGGCCCAAAGTAACTTGCCAGGCAACTCAGAAAAGACCTTGGATGGAAAAGAA
CCAAGCATTTTCTAGAGGTGGAAGGCAAACTGAACAAAGAAATAATTTACAGGTTGGATTCAGATGCAGA
GGGCACAGTACTTCCTCAGAAAGAAGACAGAATTTGCAAAAGAGACAAGACAATAAGCACTTAAACTCTA
CTCAGTCTCACAGAAGTGACCCAAATTCCGAGTCTTTATATTTTGAGGATGAAGATGGGTTTCAAGAACT
AAGTGAGAATGGAAATTCTAAAGATGAGAATATTCAACAGAAACTTTCTTCAAAAGTATTGGATGACTTA
CCTGAGAACTCACCCATCAATATAGTTCAGACTCCGATTCCCATCACCACCTCAGTTCCTAAGCGAGCCA
AGAGTCAGAAGAAAAAAGCGTTAGCTGCAGCCCTTGCTACAGCACAGGAATACTCAGAAATAAGTATGGA
GCAAAAAAAGTTGCAGGAAGCTCTATCAAAAGCAGCTGGAAAAAAGACTAAAACCCCTGTGCAGCTGGAC
CTAGGGGACATGCTAGCTGCTCTGGAGAAGCAGCAGCAGGCAATGAAGGCACGCCAGATCACCAACACCA
GGCCGCTGGCACATCCAGTTGTCACCACAGCCACTTTCCACACTAAAGACTCTAACAGAAAGACCTTAGC
CAAAAGTCAGCCATGTGTGACATCCTTTAATTCTTTGGATATTACTTCCTCTAAAGCAAAAAAAGGAAAA
GAGAAGGAAATTGCAAAGCTAAAACGACCTACGGCACTGAAAAAGGTTATTTTGAAAGAAAGAGAGGAGA
AGAAGGGGCGTCTGATTGTGGAACATAGTGTTTTGGGAGCCGAGGAGCCAACAGAAACGCATTTGGACCT
AACCAATGACTTGCCTCAGGAGACTGTCTCCCAGGAAGATGCTGGACTGAGCATGCCCAGTGATGCTTCA
CTTTCTCCAGCAAGTCAGAACTCTCCATACTGTATGACACCTGTGTCGCAAGGCTCACCCGCTAGTTCTG
GCATAGGCAGCCCAATGGCATCGTCAACGATAACCAAAATCCACAGCAAAAGATTTCGAGAATATTGTAA
CCAGGTTCTTTCTAAAGAAATTGATGAATGTGTGACCCTCCTTCTGCAAGAGCTTGTCAGTTTCCAGGAA
CGCATCTACCAAAAGGACCCAGTGAGAGCCAAGGCCAGGCGGCGGCTGGTCATGGGGCTGCGGGAGGTCA
CAAAGCACATGAAGCTGAACAAGATCAAGTGCGTCATCATTTCCCCAAACTGTGAGAAGATCCAGTCAAA
AGGTGGCCTCGATGAAGCCCTCTACAATGTTATAGCCATGGCCCGGGAGCAAGAGATCCCTTTTGTGTTT
GCCCTTGGAAGGAAAGCTCTGGGACGCTGTGTGAACAAGCTGGTTCCCGTTAGTGTTGTAGGAATCTTCA
ATTATTTTGGTGCTGAGAGCCTGTTTAATAGATTAGTGGAGCTCACAGAGGAAGCCAGGAAGGCGTATAA
AGACATGGTTGCGGCAACAGAGCAGGAGCAAGCGGAGGAAGCCTTGAGGAGCGTGAAGACGGTGCCTCAC
CACATGGGCCACTCTCGCAACCCCTCTGCAGCAAGCGCCATTTCTTTTTGCAGTGTTATCTCTGAACCCA
TTTCTGAAGTCAATGAAAAGGAATATGAGACTAACTGGAGGAGCATGGTGGAGACGTCCGACGGCTTGGA
ACCGTCGGAAATGGAGAAGGCGGCTCCCTGCACGCACAGCCCTCCTGAGAAGCCCAGCAGACTCGCTCTT
GACACCAGCCTGGTGGGTAAGCAGCTGCCGCTGGCTGCAGGCAGCATTACCTCAGCACCAAGCCAGGGCA
AACCCACGGGTGACAAGGATGAGCTGAAGCCAGACGACCTGGAGTGGGCCTCCCAGCAGAGCACAGAGAC
CGGCTCCTTGGATGGCAGCTGCCGGGATCTTTTGAACTCCTCCATCACCAGCACCACCAGCACTCTTGTA
CCTGGCATGCTTGAAGAAGAGGAGGATGAAGAGGAGGAGGAGGAGGATTATAGTCATGAGCCCACAGCAG
AAGAAGTGCAGCTCAATAGTAGAATCGAGTCCTGGGTCTCCGAGACCCAGAGGACTATGGAGACACTGCA
GCTTGGCAAAGCCCTTCCTGGCTCGGAGGAAGACAGTGCAGAGCAAAGTGGAGAGGAAGCAGCGGAAGTG
CCCGAAGGGCTGGAGTCGGGGGCAGACAGTGAGACCTGGACTCCCGACCAGCCGCCAAAGCCCAGCAGTA
ACATGGGCAAAGAGCACCCTGATTCCAGTTCTCCTCCCCAAAGTACATAA

Translation (1089 aa):
MDRAPAEQNVKLSAEVEPFVPQKKNLDAFVLPMALPSDNGSVSGVEPTPIPSYLITCYPFVQENQSNRQF
PLYNNDIRWQQPSPSPTGPYLAYPIISAQPPVSTEYTYYQLMPAPCAQVMGFYHPFPTPYSSTFQAANTV
NAISTECTERPNQLGQAFPLSSHRSRNGNRGPVVPKPQLLQQHIKNKRPQVKNVATQKETSATGPDSRSK
IVLLVDASQQTDFPSDIANKSLSESTATMLWKAKGRRRRASHPAVESSSEQGASEADIDSDSGYCSPKHN
NQSAPGALRDPASGTMNRLESSGCSGGVNWPKVTCQATQKRPWMEKNQAFSRGGRQTEQRNNLQVGFRCR
GHSTSSERRQNLQKRQDNKHLNSTQSHRSDPNSESLYFEDEDGFQELSENGNSKDENIQQKLSSKVLDDL
PENSPINIVQTPIPITTSVPKRAKSQKKKALAAALATAQEYSEISMEQKKLQEALSKAAGKKTKTPVQLD
LGDMLAALEKQQQAMKARQITNTRPLAHPVVTTATFHTKDSNRKTLAKSQPCVTSFNSLDITSSKAKKGK
EKEIAKLKRPTALKKVILKEREEKKGRLIVEHSVLGAEEPTETHLDLTNDLPQETVSQEDAGLSMPSDAS
LSPASQNSPYCMTPVSQGSPASSGIGSPMASSTITKIHSKRFREYCNQVLSKEIDECVTLLLQELVSFQE
RIYQKDPVRAKARRRLVMGLREVTKHMKLNKIKCVIISPNCEKIQSKGGLDEALYNVIAMAREQEIPFVF
ALGRKALGRCVNKLVPVSVVGIFNYFGAESLFNRLVELTEEARKAYKDMVAATEQEQAEEALRSVKTVPH
HMGHSRNPSAASAISFCSVISEPISEVNEKEYETNWRSMVETSDGLEPSEMEKAAPCTHSPPEKPSRLAL
DTSLVGKQLPLAAGSITSAPSQGKPTGDKDELKPDDLEWASQQSTETGSLDGSCRDLLNSSITSTTSTLV
PGMLEEEEDEEEEEEDYSHEPTAEEVQLNSRIESWVSETQRTMETLQLGKALPGSEEDSAEQSGEEAAEV
PEGLESGADSETWTPDQPPKPSSNMGKEHPDSSSPPQST


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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