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Report for CCDS38129.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38129.1 Public Mus musculus 2 Slc38a11 23 108 98 CCDS HistoryNCBI Gene:320106Re-query CCDS DB by CCDS ID:38129.1Re-query CCDS DB by GeneID:320106See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 38129.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000112420.7 ENSMUSP00000108039.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112420.7Link to Ensembl Protein Viewer:ENSMUSP00000108039.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000112420Re-query CCDS DB by Protein ID:ENSMUSP00000108039
Original member Current member NCBI NM_177074.2 NP_796048.2 Accepted alive Link to Nucleotide Sequence:NM_177074.2Link to Protein Sequence:NP_796048.2Re-query CCDS DB by Nucleotide ID:NM_177074Re-query CCDS DB by Protein ID:NP_796048Link to BLAST:NP_796048.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_796048.2 453 Q3USY0-1 453 100% 0 0

Chromosomal Locations for CCDS 38129.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 65316770 65317030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 65326526 65326657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 65330280 65330392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 65334590 65334751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 65335732 65335802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 65350038 65350117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 65353763 65353869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 65355324 65355389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 65358054 65358188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 65361327 65361401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 65363347 65363467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 65363881 65363919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1362 nt):
ATGAGCTATCAGCAGCCACAGCTGAGCGGTCCTCTGCAGAGAGAGACAGACTCGAGTGACAGAGAAAGCC
TGATCTCCGGACATGAACACGGAGGGAAATCTAGTCAGTCTGCCGCTGTTTTCAATGTAGTCAATTCTGT
TATAGGATCTGGGATAATAGGATTGCCTTATTCAATGAAGCAAGCTGGATTTCCCTTGGGAATACTGCTT
TTATTCTTGGTCTCATACATCACAGACTTCTCCCTAGTTTTATTGATAAAAGGAGGAGCCCTCTCTGGAA
CAGACTCCTACCAGTCTTTGGTTAACAAGACCTTTGGCTTTCCCGGGTACCTGCTGCTCTCTACCCTACA
GTTTATGTACCCTTTCATAGCTATGATAAGTTACAACATAATAACTGGAGATACTTTGAGCAAAGTTTTT
CAAAGACTCCCAGGAGTTGACCCTGGAGGTTGGTTTATTAGTCGGCACTTCATTATTGTGGTTTCAACGG
TTACATGTACTCTGCCATTGTCACTGTACCGAGATATAGCAAAGCTTGGAAAGATCTCTTTCATCTCTAC
AATTTTAACAACTGTAATTCTTGGAATCGTAATGACAAGGGCCATTTCCTTGGGACCAAACATACCAAAG
ACAGACAATGCTTGGGTGTTTGCAAAGCCCAATGCCATCCAGGCTATTGGGGTGATGTCTTTTGCGTTCA
TTTGCCACCATAACTGCTTCCTAGTCTATGGTTCTCTCGAAGAGCCCACAGTAGCGAAGTGGCGCCGGAT
TATCCACACATCCATCTTGGTTTCTGTATTCATCTGTGTGCTCTTTGCAACGTGCGGGTACTTCACTTTT
ACTGGCTTCACTCAAGGAGACTTGTTTGAAAATTACTGCAGAAGTGATGACCTGGTGACCTTTGGGAGGT
TTTGTTATGGTATCACTGTCATTTTGACTTACCCGATTGAATGCTTTGTGACCAGAGAGGTAATTGCCAA
TGTGTTTTTTGGTGGGACTCTTTCATCAGTGTTCCACACCGTCTTAGCAGTGCTTATCGTTACTGCAGCC
ACACTGGTATCATTGATGATTGAGTGCCTTGGAATAGTTTTAGAACTCAATGGTGTGCTCTGCGCGGCTC
CTTTGATTTTTATCATCCCCTCAGCTTGCTATCTGAAATTATCCGAAGAACCAAGGACACATTCCGATAA
GATAATGGCCTGTGTCATGTTTCCCGTCGGGGCGGTGGTGATGGTGGTAGGCTTCGTCATGGCTATCACA
AATCCTCAGGACTGCACCCACGGGCAGGAAATGTTCTACTGCTTTCCTGAAAATGTCTCCTTCACAAACA
CCTCCTGGTCTCATCTTCAACTGACAACATAA

Translation (453 aa):
MSYQQPQLSGPLQRETDSSDRESLISGHEHGGKSSQSAAVFNVVNSVIGSGIIGLPYSMKQAGFPLGILL
LFLVSYITDFSLVLLIKGGALSGTDSYQSLVNKTFGFPGYLLLSTLQFMYPFIAMISYNIITGDTLSKVF
QRLPGVDPGGWFISRHFIIVVSTVTCTLPLSLYRDIAKLGKISFISTILTTVILGIVMTRAISLGPNIPK
TDNAWVFAKPNAIQAIGVMSFAFICHHNCFLVYGSLEEPTVAKWRRIIHTSILVSVFICVLFATCGYFTF
TGFTQGDLFENYCRSDDLVTFGRFCYGITVILTYPIECFVTREVIANVFFGGTLSSVFHTVLAVLIVTAA
TLVSLMIECLGIVLELNGVLCAAPLIFIIPSACYLKLSEEPRTHSDKIMACVMFPVGAVVMVVGFVMAIT
NPQDCTHGQEMFYCFPENVSFTNTSWSHLQLTT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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