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Report for CCDS37856.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37856.1 Public Mus musculus 18 Mapk4 23 108 98 CCDS HistoryNCBI Gene:225724Re-query CCDS DB by CCDS ID:37856.1Re-query CCDS DB by GeneID:225724See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37856.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000091851.9 ENSMUSP00000089462.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000091851.9Link to Ensembl Protein Viewer:ENSMUSP00000089462.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000091851Re-query CCDS DB by Protein ID:ENSMUSP00000089462
Original member Current member NCBI NM_172632.2 NP_766220.2 Accepted alive Link to Nucleotide Sequence:NM_172632.2Link to Protein Sequence:NP_766220.2Re-query CCDS DB by Nucleotide ID:NM_172632Re-query CCDS DB by Protein ID:NP_766220Link to BLAST:NP_766220.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766220.2 583 Q6P5G0 583 100% 0 0

Chromosomal Locations for CCDS 37856.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 73930398 73931094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 73933897 73934098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 73935006 73935167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 73937130 73937274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 73969891 73970436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1752 nt):
ATGGCTGAGAAAGGTGACTGCATCGCCAGCGTCTACGGGTATGACCTTGGTGGGCGCTTCATTGACTTCC
AA
CCCCTTGGCTTTGGGGTCAACGGGCTGGTGCTGTCAGCTACGGACAGCAGGGCTTGCCGGAAGGTGGC
C
GTGAAGAAGATCGTTCTGAGTGACGCCCGCAGCATGAAGCACGCGCTCCGAGAGATCAAAATCATCCGG
CGC
CTGGACCACGACAACATTGTCAAGGTGTACGAGGTGCTGGGACCCAAGGGGAGCGATCTGCAGGGCG
AG
CTCTTCAAGTTTAGCGTGGCCTATATCGTCCAAGAGTACATGGAGACTGACCTGGCGTGCCTGCTGGA
G
CAGGGCACGCTGACTGAGGACCACGCCAAGCTGTTCATGTATCAGCTGCTCCGTGGGCTCAAGTACATC
CAC
TCTGCGAACGTGCTGCACAGAGACCTGAAGCCCGCCAACATCTTCATCAGCACGGAGGACCTTGTGC
TC
AAGATTGGGGATTTCGGGTTGGCAAGGATCGTGGATCAACATTACTCACACAAGGGTTATCTGTCAGA
A
GGGTTGGTGACAAAGTGGTACCGGTCTCCGAGACTGCTCCTGTCCCCAAATAACTACACAAAAGCCATC
GAT
ATGTGGGCAGCTGGCTGCATCCTGGCAGAGATGCTCACGGGGAAAATGCTCTTCGCTGGGGCTCACG
AG
CTGGAGCAGATGCAGCTCATCCTAGACACCATCCCTGTGGTCCGGGAGGAAGACAAGGAGGAGCTGCT
C
AGGGTGATGCCGTCCTTCGTCAGCAGCACCTGGGAGGTGAAGAGGCCACTGCGCAAGCTGCTCCCGGAC
GTC
AACAGTGAAGCCATTGACTTTCTGGAGAAGATCCTGACCTTTAACCCCATGGACCGCTTAACAGCTG
AG
ATGGGGCTTCAGCATCCTTACATGAGCCCGTACTCGTGCCCCGAGGATGAGCCCACCTCACAACACCC
T
TTCCGCATTGAGGACGAGATCGACGACATCGTGCTGATGGCTGCCAGTCAGAGCCAGCTCTCCAACTGG
GAC
AGGTATCCTGTGAGCCTGTCCTCAGATCTGGAATGGCGGCCTGACCGGTGCCAGGACGCCAGCGAGG
TG
CAGCGCGATCCACGTGCAGGCTCTACACCGCTGGCGGAGGATGTTCAGGTGGACCCACGCAAGGACTC
A
CAGAGCAGCTCCGAGCGCTTCCTGGAGCAGTCACACTCGTCCATGGAGCGCGCCTTCGAGGCCGACTAT
GGA
CGGTCCTGCGACTACAAAGTGGGGTCTCCATCCTACCTGGACAAGCTACTGTGGCGCGACAACAAGC
CC
CACCACTACTCGGAACCCAAGCTCATCCTGGACCTGTCGCACTGGAAGCAGGCGGCCAGCGCTCCCCC
C
AGGGCTGCAGTAGCAGCAGACCCTGTGTCACGTGAGGATGAGCCAGCAAGCCTCTTTCTGGAGATTGCA
CAG
TGGGTCAAGAGCACACAAAGTGGCTCTGAGCGTGCCAGTCCTCCCCCTGATGCCCCAGAGCCCCGTC
TC
TCTGCCTCACCCCCGGGACACCCAACACCCATCGATGGGGGTGCCAGTCCCCAGTTCGACTTAGACGT
G
TTCATCTCGCGTGCCCTAAAGCTCTGCACCAAACCTGAGGACCTCCCGGAAAACAAACTGGGCGACCTG
AAT
GGCGCGTGCATCTCTGAGCACCCTGGCGACCTCGTGCAGACAGAGGCCTTCTCCAAAGAAAGGTGGT
GA


Translation (583 aa):
MAEKGDCIASVYGYDLGGRFIDFQPLGFGVNGLVLSATDSRACRKVAVKKIVLSDARSMKHALREIKIIR
R
LDHDNIVKVYEVLGPKGSDLQGELFKFSVAYIVQEYMETDLACLLEQGTLTEDHAKLFMYQLLRGLKYI
H
SANVLHRDLKPANIFISTEDLVLKIGDFGLARIVDQHYSHK
GYLSEGLVTKWYRSPRLLLSPNNYTKAI
D
MWAAGCILAEMLTGKMLFA
GAHELEQMQLILDTIPVVREEDKEELLRVMPSFVSSTWEVKRPLRKLLPD
V
NSE
AIDFLEKILTFNPMDRLTAEMGLQHPYMSPYSCPEDEPTSQHPFRIEDEIDDIVLMAASQSQLSNW
D
RYPVSLSSDLEWRPDRCQDASEVQRDPRAGSTPLAEDVQVDPRKDSQSSSERFLEQSHSSMERAFEADY
G
RSCDYKVGSPSYLDKLLWRDNKPHHYSEPKLILDLSHWKQAASAPPRAAVAADPVSREDEPASLFLEIA
Q
WVKSTQSGSERASPPPDAPEPRLSASPPGHPTPIDGGASPQFDLDVFISRALKLCTKPEDLPENKLGDL
N
GACISEHPGDLVQTEAFSKERW




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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