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Report for CCDS37329.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37329.1 Public Mus musculus 16 Csta3 23 108 98 CCDS HistoryNCBI Gene:408196Re-query CCDS DB by CCDS ID:37329.1Re-query CCDS DB by GeneID:408196See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 37329.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000089628.3 ENSMUSP00000087054.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000089628.3Link to Ensembl Protein Viewer:ENSMUSP00000087054.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000089628Re-query CCDS DB by Protein ID:ENSMUSP00000087054
Original member Current member NCBI NM_001082542.1 NP_001076011.1 Accepted alive Link to Nucleotide Sequence:NM_001082542.1Link to Protein Sequence:NP_001076011.1Re-query CCDS DB by Nucleotide ID:NM_001082542Re-query CCDS DB by Protein ID:NP_001076011Link to BLAST:NP_001076011.1

Chromosomal Locations for CCDS 37329.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 36210403 36210468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 36213518 36213619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 36217663 36217788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (294 nt):
ATGATTCTCGGAGGTGTTTCAGAGGCAAGACCTGCCACACCAGAAATCCAGGAGATTGCTAACAAGGTCA
GACCTCAGCTTGAAGCGAGAACCAGTGAGAAATATGAAAAATTCGAAGCCGTTGAGTATAAATCTCAATT
CGTCGCTGGACGAAATTATTTCATTAAGATGGATGTAGGGTGTGGTTGTTTCCTTCACATAAAAGTCTAC
CGTGCACATTCTGGAAAAGATAATTTTGAACTTCATGGTTACCAAACGAACAAAACCAAGACTGATGAGT
TGACCTACTTCTAA

Translation (97 aa):
MILGGVSEARPATPEIQEIANKVRPQLEARTSEKYEKFEAVEYKSQFVAGRNYFIKMDVGCGCFLHIKVY
RAHSGKDNFELHGYQTNKTKTDELTYF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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