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Report for CCDS37165.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37165.1 Public Mus musculus 15 Pnpla3 23 108 98 CCDS HistoryNCBI Gene:116939Re-query CCDS DB by CCDS ID:37165.1Re-query CCDS DB by GeneID:116939See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37165.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000045289.5 ENSMUSP00000043826.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000045289.5Link to Ensembl Protein Viewer:ENSMUSP00000043826.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000045289Re-query CCDS DB by Protein ID:ENSMUSP00000043826
Original member NCBI NM_054088.3 NP_473429.2 Updated not alive Link to Nucleotide Sequence:NM_054088.3Link to Protein Sequence:NP_473429.2Re-query CCDS DB by Nucleotide ID:NM_054088Re-query CCDS DB by Protein ID:NP_473429
Current member NCBI NM_054088.4 NP_473429.2 Accepted alive Link to Nucleotide Sequence:NM_054088.4Link to Protein Sequence:NP_473429.2Re-query CCDS DB by Nucleotide ID:NM_054088Re-query CCDS DB by Protein ID:NP_473429Link to BLAST:NP_473429.2

Chromosomal Locations for CCDS 37165.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 84167874 84168060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 84171082 84171314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 84172716 84172781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 84174268 84174477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 84176816 84176876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 84179180 84179335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 84180920 84181052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 84185977 84186085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1155 nt):
ATGTATGACCCAGAGCGCCGCTGGAGCCTGTCGTTTGCAGGCTGCGGCTTCCTGGGCTTCTACCACGTCG
GGGCTACGCTATGTCTGAGCGAGCGCGCCCCGCACCTCCTCCGCGATGCGCGCACTTTCTTTGGCTGCTC
GGCCGGTGCACTGCACGCGGTCACCTTCGTGTGCAGTCTCCCTCTCGGCCGTATAATGGAGATCCTCATG
GACCTCGTGCGGAAAGCCAGGAGCCGCAACATCGGCACCCTCCACCCGTTCTTCAACATTAACAAGTGCA
TCAGAGACGGGCTCCAGGAGAGCCTCCCAGACAATGTCCACCAGGTCATTTCTGGCAAGGTTCACATCTC
ACTCACCAGGGTGTCGGATGGGGAGAACGTGCTGGTGTCTGAGTTCCATTCCAAAGACGAAGTCGTGGAT
GCCCTGGTGTGTTCCTGCTTCATTCCCCTCTTCTCTGGCCTAATCCCTCCTTCCTTCCGAGGCGAGCGGT
ACGTGGACGGAGGAGTGAGCGACAACGTCCCTGTGCTGGATGCCAAAACCACCATCACGGTGTCACCTTT
CTACGGTGAGCATGACATCTGCCCCAAAGTCAAGTCCACCAACTTCTTCCACGTGAATATCACCAACCTC
AGCCTCCGCCTCTGCACTGGGAACCTCCAACTTCTGACCAGAGCGCTCTTCCCGTCTGATGTGAAGGTGA
TGGGAGAGCTGTGCTATCAAGGGTACCTGGACGCCTTCCGGTTCCTGGAGGAGAATGGCATCTGTAACGG
GCCACAGCGCAGCCTGAGTCTGTCCTTGGTGGCGCCAGAAGCCTGCTTGGAAAATGGCAAACTTGTGGGA
GACAAGGTGCCAGTCAGCCTATGCTTTACAGATGAGAACATCTGGGAGACACTGTCCCCCGAGCTCAGCA
CAGCTCTGAGTGAAGCGATTAAGGACAGGGAGGGCTACCTGAGCAAAGTCTGCAACCTCCTGCCCGTCAG
GATCCTGTCCTACATCATGCTGCCCTGCAGTCTGCCCGTGGAGTCGGCTATCGCTGCAGTCCACAGGCTG
GTGACATGGCTCCCTGATATCCAGGATGATATCCAGTGGCTACAATGGGCGACATCCCAGGTTTGTGCCC
GAATGACGATGTGCCTGCTCCCCTCTACCAGGTAA

Translation (384 aa):
MYDPERRWSLSFAGCGFLGFYHVGATLCLSERAPHLLRDARTFFGCSAGALHAVTFVCSLPLGRIMEILM
DLVRKARSRNIGTLHPFFNINKCIRDGLQESLPDNVHQVISGKVHISLTRVSDGENVLVSEFHSKDEVVD
ALVCSCFIPLFSGLIPPSFRGERYVDGGVSDNVPVLDAKTTITVSPFYGEHDICPKVKSTNFFHVNITNL
SLRLCTGNLQLLTRALFPSDVKVMGELCYQGYLDAFRFLEENGICNGPQRSLSLSLVAPEACLENGKLVG
DKVPVSLCFTDENIWETLSPELSTALSEAIKDREGYLSKVCNLLPVRILSYIMLPCSLPVESAIAAVHRL
VTWLPDIQDDIQWLQWATSQVCARMTMCLLPSTR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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