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Report for CCDS37095.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37095.1 Public Mus musculus 15 Trappc9 23 108 98 CCDS HistoryNCBI Gene:76510Re-query CCDS DB by CCDS ID:37095.1Re-query CCDS DB by GeneID:76510See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37095.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000089770.10 ENSMUSP00000087202.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000089770.10Link to Ensembl Protein Viewer:ENSMUSP00000087202.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000089770Re-query CCDS DB by Protein ID:ENSMUSP00000087202
Original member Current member NCBI NM_180662.2 NP_850993.2 Accepted alive Link to Nucleotide Sequence:NM_180662.2Link to Protein Sequence:NP_850993.2Re-query CCDS DB by Nucleotide ID:NM_180662Re-query CCDS DB by Protein ID:NP_850993Link to BLAST:NP_850993.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_850993.2 1139 Q3U0M1-2 1139 100% 0 0

Chromosomal Locations for CCDS 37095.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 72589995 72590162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 72590616 72590839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 72685283 72685373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 72693504 72693657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 72736776 72736886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 72757216 72757358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 72903557 72903681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 72925506 72925658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 72936962 72937125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 72941860 72941992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 72946059 72946185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 72948790 72948875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 72952974 72953119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 72963560 72963686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 72999972 73000115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 73012806 73013022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 73025962 73026087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 73031522 73031643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 73050595 73050723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 73052162 73052307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 73057922 73058505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3420 nt):
ATGAGCGTCCCCGACTACATGCAGTGCGCAGAGGATCACCAGACCCTTCTGGTGGTCGTCCAGGCCGTGG
GCATCGTCTCTGAGGAGAACTTCTTCAGGATCTACAAGCGGATCTGCTCCGTGAGCCAGCTCAGTGTGCG
CGACACGCAGCGTGCCCTCTTCATCCGCTATCGGCACCACTACCCGCCCGAGAACAACGAGTGGGGCGAC
TTCCAGACGCACCGCAAGGTGGTAGGCCTCATCACCATCACCGATTGCTTCTCGCCCAAAGACTGGCCAC
AGACCTTCGAGAAGTTCCACGTGCAGAAGGAGATCTACGGTTCCACGCTCTACGATTCCCGCCTCTTCGT
GTTCGGGCTGCAGGGTGATGTGGCTGAGCAGCCGCGCCCGGATGTGGCCTTCTATCCCAACTACGATGAC
TGCGATTCAGTGGAGAAGCGCATCGAAGACTTCATCGAGTCCCTTTTCATTGTGTTGGAGTCCAAGCGCC
TGGACAGAGCCACCGACAAATCCGGGGACAAGATCCCTCTTCTCTGTGTCCCCTTCGAGAAGAAGGACTT
CGTGGGACTAGACACGGATAGCAGACACTACAAGAAGCGGTGCCAAGGACGCATGCGGAAACACGTTGGG
GACTTGTGCCTCCAGGCTGGGATGCTGCAGGACGCCCTGGTACACTACCACATGTCCGTGGAGCTCCTGC
GCTCAGTGAATGACTTCCTGTGGTTAGGGGCTGCCCTGGAGGGGTTGTGCTCGGCTTCAGTCATTTATCA
TTATCCCGGAGGAACTGGTGGCAAGACTGGGGCTCGGAGACTCCAAGGCAGCTCACTTCCCTCAGAAGCA
GCCAACAGACACCGGCCAGGTGCTCTCACCACCAACGGCATAAATCCTGACACCAGCACTGAGATCGGAA
GGGCCAAGAATTGCCTCAGCCCCGAGGACATCATTGACAAATACAAAGAGGCCATCTCCTATTACAGCAA
GTACAAGAACGCCGGAGTGATTGAGCTGGAAGCCTGTGTCAAGGCCGTGCGCGTCCTAGCGATTCAGAAG
CGTGGCATGGAGGCTTCGGAGTTTCTTCAGAATGCTGTGTACATCAATCTCCGGCAGCTTTCGGAAGAAG
AGAAAATCCAGCGCTACAGCATCCTGTCTGAGCTCTACGAGCTGATTGGCTTCCACCGCAAGTCAGCATT
CTTCAAGCGAGTGGCTGCCATGCAGTGTGTGGCGCCAAGCATTGCAGAACCTGGCTGGAGGGCCTGTTAC
AAGCTCCTTTTGGAGACGCTGCCTGGCTACAGTCTGTCGCTAGATCCCAAGGACTTCAGCAAAGGCACAC
ACCGAGGCTGGGCTGCCGTTCAGATGCGTCTGCTGCATGAGCTGGTCTATGCCTCCCGCAGGATGGGGAA
CCCCGCACTGTCCGTGCGGCACCTCTCCTTCCTCTTGCAGACCATGCTGGACTTCCTGTCTGACCAGGAA
AAGAAAGATGTGACTCAAAGCCTGGAGAACTACACTGCCAAGTGTCCCGGGACGATGGAGCCCATCACCC
TCCCAGATGGTCTCACACTGCCTCCCGTGCCGTTTACCAAGTTGCCCATTGTCAGGTGCGTGAAGCTGCT
GAGTCTCCCCACCAGCCTGCGACCCCACAAGGTGAAAAGCTTGCTGGGCCAGAGCATGTCCACCAAGAGC
CCCTTCATCTATTCGCCAATCATCGCACATAACCGTGGAGAAGAACGCAACAAAAAAATAGATTTCCAGT
GGGTTCAAGGAGATGTGTGTGAAGTTCAGCTGATGGTGTACAACCCAATGCCGTTTGAGCTCCGCGTGGA
AAACATGGGGCTTCTCACCAGCGGAGTGGAGTTTGAGTCTCTTCCTGCAGCGCTTTCCCTCCCTGCGGAA
TCTGGTTTGTACCCGGTGACGCTGGTCGGAGTCCCACAGACTACAGGAATGATCACTGTGAATGGTTACC
ATACCACAGTCTTTGGGGTCTTCAGCGACTGCCTTCTGGACAACCTTCCGGGACTGAAGACGGGCGGCTC
CACCGTGGAAGTCATCCCTGCCTTGCCAAGACTGCAGATCAGCACATCGCTGCCCAGGTCCGCACGCTCA
CTGCAGCCTTCTGCCGGCGATGAGATCGCCACCAACGTATCTGTTCAGCTGTACAACGGAGAAACCCAGC
AGCTGGCTGTCACCTTGGAGAACATCGGACTGGAGCCTCTGGAGCAGCTGGAGGTCACCTCAAAGCTTCT
CACCACCAAGGAAAAGTTGTATGGCGACTTCTTGAGCTGGAAACTGGAAGAGACGCTGGCCCAGTTTCCC
CTGCAGCCCGGGAAGGTGGCTACTTTCACCATCAACATCAAGGCAAAGCTGGATTTCTCTTGCCAGGAGA
ATCTTCTCCAGGACCTGAGTGATGATGGAATCAGCGTGAGCGGCTTTCCCCTGTCCAGTCCTTTCCGCCA
GGTGGTGCGGCCCCGAGTGGAGAGCAGACCCACAAACCCTTCTGAGGGCAGCAAGACGGGGGACCTTGGC
CACGTCAAGACTCTGGAAGCTGTCCTGAACTTCAAGTACTCTGGAGGCCCAGGCCACGTGGAAGGGTATT
ACAGGAACCTCTCCCTGGGACTACACGTGGAAGTCGAGCCTTCTGTGTTTTTTACCCGAGTCAGCACACT
TCCAGCAACCAGCACCCGGCAGTGCCACTTGCTCCTTGATGTCTTCAACTCCACAGAGCACGAGCTGACA
GTCTGCGCCAGGAACAACTCTGAACTTGTCCTGCATGCCAGTGAGTGCCAGCGAATGGCTATTCAAGTGG
ACAAGTTCAACTTTGAAAGTGTCCCAGAATCCCCCGGAGAGAAGGGACACTTTGCAAATCTGAAGCAGCT
GGAAGAAGAGAGACAGGAGGCACGAGGCCTGGAGATCAGCAGCAAGCTGGACATCCGCTGGAGAATTCCT
TCTCTGAAGCGCAGTGGTGAGGCGAGCGTGGAGGGCCTCCTGAACCAGCTCATCCTGGAACACCTGCAGC
TGGCACCTCTGCAGTGGGATGTGCTAGTGGATGGGCAGCCATGTGACTGTGAGGTGGCAGCTGCCTGCCA
GGTCGGTGACCCCGTGCGCTTGGAGGTGCGGCTGACTAACAGGAGTCCCCGAAGTGTGGGGCCCTTTGCC
CTCACCGTGGTCCCTTTCCAGGACCACCAGAACGGTGTGCACAACTATGACCTGCATGATGTCATCTCCT
TTGTGGGTTCCAGTACCTTCTACCTTGACACGGTACAACCATCAGGCCAATCCACCTGCCTTGGGGCCCT
CCTCTTCCTCTACACAGGTGACTTCTTCCTCAACATCCGGTTCCACGAGGACTGCAAGAGCAAGGAGCTG
CCACCCTCCTGGGTTTGCTTACCCAGCGTGCATGTGAGGGCCCTCGGGGCACAGGCCTGA

Translation (1139 aa):
MSVPDYMQCAEDHQTLLVVVQAVGIVSEENFFRIYKRICSVSQLSVRDTQRALFIRYRHHYPPENNEWGD
FQTHRKVVGLITITDCFSPKDWPQTFEKFHVQKEIYGSTLYDSRLFVFGLQGDVAEQPRPDVAFYPNYDD
CDSVEKRIEDFIESLFIVLESKRLDRATDKSGDKIPLLCVPFEKKDFVGLDTDSRHYKKRCQGRMRKHVG
DLCLQAGMLQDALVHYHMSVELLRSVNDFLWLGAALEGLCSASVIYHYPGGTGGKTGARRLQGSSLPSEA
ANRHRPGALTTNGINPDTSTEIGRAKNCLSPEDIIDKYKEAISYYSKYKNAGVIELEACVKAVRVLAIQK
RGMEASEFLQNAVYINLRQLSEEEKIQRYSILSELYELIGFHRKSAFFKRVAAMQCVAPSIAEPGWRACY
KLLLETLPGYSLSLDPKDFSKGTHRGWAAVQMRLLHELVYASRRMGNPALSVRHLSFLLQTMLDFLSDQE
KKDVTQSLENYTAKCPGTMEPITLPDGLTLPPVPFTKLPIVRCVKLLSLPTSLRPHKVKSLLGQSMSTKS
PFIYSPIIAHNRGEERNKKIDFQWVQGDVCEVQLMVYNPMPFELRVENMGLLTSGVEFESLPAALSLPAE
SGLYPVTLVGVPQTTGMITVNGYHTTVFGVFSDCLLDNLPGLKTGGSTVEVIPALPRLQISTSLPRSARS
LQPSAGDEIATNVSVQLYNGETQQLAVTLENIGLEPLEQLEVTSKLLTTKEKLYGDFLSWKLEETLAQFP
LQPGKVATFTINIKAKLDFSCQENLLQDLSDDGISVSGFPLSSPFRQVVRPRVESRPTNPSEGSKTGDLG
HVKTLEAVLNFKYSGGPGHVEGYYRNLSLGLHVEVEPSVFFTRVSTLPATSTRQCHLLLDVFNSTEHELT
VCARNNSELVLHASECQRMAIQVDKFNFESVPESPGEKGHFANLKQLEEERQEARGLEISSKLDIRWRIP
SLKRSGEASVEGLLNQLILEHLQLAPLQWDVLVDGQPCDCEVAAACQVGDPVRLEVRLTNRSPRSVGPFA
LTVVPFQDHQNGVHNYDLHDVISFVGSSTFYLDTVQPSGQSTCLGALLFLYTGDFFLNIRFHEDCKSKEL
PPSWVCLPSVHVRALGAQA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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