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Report for CCDS37061.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37061.1 Public Mus musculus 15 Spag1 23 108 98 CCDS HistoryNCBI Gene:26942Re-query CCDS DB by CCDS ID:37061.1Re-query CCDS DB by GeneID:26942See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37061.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000047348.10 ENSMUSP00000047335.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000047348.10Link to Ensembl Protein Viewer:ENSMUSP00000047335.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000047348Re-query CCDS DB by Protein ID:ENSMUSP00000047335
Original member Current member EBI ENSMUST00000171205.2 ENSMUSP00000132233.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000171205.2Link to Ensembl Protein Viewer:ENSMUSP00000132233.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000171205Re-query CCDS DB by Protein ID:ENSMUSP00000132233
Original member Current member NCBI NM_001359980.1 NP_001346909.1 Accepted alive Link to Nucleotide Sequence:NM_001359980.1Link to Protein Sequence:NP_001346909.1Re-query CCDS DB by Nucleotide ID:NM_001359980Re-query CCDS DB by Protein ID:NP_001346909Link to BLAST:NP_001346909.1
Original member Current member NCBI NM_012031.4 NP_036161.2 Accepted alive Link to Nucleotide Sequence:NM_012031.4Link to Protein Sequence:NP_036161.2Re-query CCDS DB by Nucleotide ID:NM_012031Re-query CCDS DB by Protein ID:NP_036161Link to BLAST:NP_036161.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001346909.1 901 Q80ZX8-1 901 100% 0 0
NP_036161.2 901 Q80ZX8-1 901 100% 0 0

Chromosomal Locations for CCDS 37061.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 36181698 36181843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 36183657 36183816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 36186607 36186732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 36190472 36190536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 36191126 36191235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 36192004 36192109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 36195376 36195506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 36197738 36197844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 36200202 36200361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 36210543 36210821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 36211100 36211199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 36216167 36216319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 36221406 36221566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 36224109 36224241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 36227136 36227262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 36233203 36233343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 36234301 36234669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 36234767 36234898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2706 nt):
ATGACTGCTAAGGCTAAGGACTGTCCATCATTGTGGGGCTTTGGAACAACAAAAACATTTAAAATTCCCA
TCGAACATTTGGATTTCAAGTATATTGAAAACTGTTCAGATGTGAAACACCTGGAAAAAATTCTTTATGT
GCTGAGGTCTGGTGAAGAAGGCTACTATCCTGAACTCACGGAATTTTGCGAGAAGTGCCTCACCAACTTG
GCTCCTAAAAGTCGAGCTCTGAGGAAGGACAAGCCTGCAGAGACAGCATCCAGCTTTTCAGCGGAAGAGT
GGGAAAAAATCGACAGTGATCTAAAGAGTTGGGTGTCAGAAATCAAAAGAGAGGAAAATACATGTCACTT
CCATGACCCTGAAAACCATCCCGGAGTGGAAGATCCTCTGCCTCCTGTCCGCGGCTCCACCTGCTGCCCT
CACAGTGGCAAGGAAACATATTCTAAAAGTAAGACAGCTAAGAAGAGGATTCCAAGGGATTATGCAGAAT
GGGATAAATTTGATGTGGAAAAAGAATGTTCAAAGATTGATGAGGATTACAAAGAAAAGACTGTCATAAA
CAACAAGGCTCATCTGTCTAAAATTGAGACAAAAATAGAAACAGCAGGTCTGACTGAGAAGGAAAAGAGT
TTTCTTGCCAATCGTGAAAAGGGAAAAGGGAACGAGGCTTTCTACTCTGGGGACTATGAAGAGGCCGTGA
TGTATTACACCAGGAGCTTATCAGCCCTTCCCACCGCCATTGCCTATAACAATCGAGCTCAGGCCGAAAT
CAAGTTGCAGAGATGGAGCAGTGCTCTTGAAGACTGTGAGAAGGCCTTGGAGCTAGATCCCGGAAACGTA
AAAGCTCTCCTGAGACGAGCCACTACATATAAACATCAAAACAAGCTCCAGGAAGCTGTGGACGACCTGA
GAAAGGTGCTGCAGGTGGAGCCGGACAACGACTTGGCCAAGAAGACCTTATCAGAGGTTGAAAGAGATCT
GAAGAATTCAGAGCCTGTCTCTGAGCTCCAAACCAAAGGGAAGAGGATGGTTATTGAAGAAGTTGAAAAC
TCGGGAGATGAAGGTGGAAAGGGAAGCGCAGATGAGCGTGAAGATGGTGGCTCGGATGAGGCGGCCATGG
GCAACATTCAGAAGAAGCTGATGGTCCGCCGGAGCGAGGGTGGCAGGCGGTCGCGGCGGGGCCGGACACC
GGGGCCCCGAGCTGAGCAGCAGGGAGGCCTGCGAGAGACAGCGACGGCCAGCACCGGCGACAGTCACTAC
CCGGAGGAGCCGCGAGCCGCTGACAACCCCAGCGGCCTCAAGAGACGGGGCAACGAGCTGTTCCGCGGCG
GGCAATTCGCAGAGGCAGCCGCGCAATACTCGGTGGCGATAGCGCAGCTGGAACCCACAGGAAGTGCAAA
TGCGGATGAGCTAAGCATCTTGTATTCAAATAGAGCGGCATGCTACCTCAAAGAAGGGAACTGCAGGGAC
TGCATCCAGGATTGTAACAGGGCTCTGGAACTTCATCCGTTCTCAGTGAAGCCTCTTCTGCGGCGAGCAA
TGGCCTATGAGACCTTAGAGCAATACAGGAACGCATATGTGGACTATAAAACAGTGCTGCAGATAGATTG
TGGGATCCAGCTGGCGAGCGACAGTGCTAACAGAATAGCACGAATCTTAACAGAGCTAGATGGATCAAAA
TGGCGGGAGAGACTGCCACCCATCCCAGCTGTACCCACATCTGAGCCACTGCGAGTTTGGCTCCCTGCTG
CAGAGACCCCAGACCAAGATCCCTGTCCCAACAACTGCATGCCGAGCATCACAGATGAAAAAATGTTTCA
AGCCCTCAAGGAAGAAGGAAATCAACTTGTAAAGGACAAAAATTATAAAGATGCCATTAGTAAATACAAT
GAATGCTTAAAGATTAACAGCAAGGCATGTGCCATCTATACAAACAGGGCTCTCTGTTACCTGAAGCTGG
GCCAGTTTGAAGAGGCAAAGCTGGACTGTGAGCAGGCGCTTCAGATAGACGGCGAGAATGTGAAAGCCAG
CCACAGACTAGCGCTCGCCCAGAAAGGACTCGAGAACTGCCGGGAAAGCGGGGTGGACCCCAGTCAAGTC
CTCCTAAGCCCAGATTCCAGTGAAGCCGCCCGGCACCTGGACACTAAGAATGACACAGCACCTCCCAGCA
AAGGAAGGGAGAGGAGGAGAATCCAAGTCCAAGAGGTGGATGGCAGCAGTGATGAGGAGCCTGAGAGACC
TGCAGAGGCCTCTGCTACCTCCGCACCTGCCAGAGATGGTGTGGAAGATGGAGGGTCTGCAGAACCAGCA
GAAAAACTCGACGTCTCCAAGCCTACTAATGCCTATGAGTTTGGACAGGTCCTAAGCACTATCAGTGCCA
GGAAAGATGAAGAGGCCTGTGCACATCTTTTAGCCATCACTGCACCCAAAGACCTGCCACTGTTGCTAAG
TAACAAACTTGAGGGGGACACGTTCCTCCTCCTCATTCAGTCACTTAAAAGTCACCTTGTGGCTAAAGAC
CCCTCCCTGGTGTATGAGCATCTCCTGTATCTGAGCAAAGCAGAGAGGTTTAAGACGATGCTGACACTAA
TTAACAAAGGCCAAAAGGAGCAGATGGCGCAGCTGTTTGATGGTCTGTCAGACACACAGTCCGACGGTTT
GACGGCAGAGGATGTACAGGCCCTAAGAAGGCAGTATGAGCTTTAA

Translation (901 aa):
MTAKAKDCPSLWGFGTTKTFKIPIEHLDFKYIENCSDVKHLEKILYVLRSGEEGYYPELTEFCEKCLTNL
APKSRALRKDKPAETASSFSAEEWEKIDSDLKSWVSEIKREENTCHFHDPENHPGVEDPLPPVRGSTCCP
HSGKETYSKSKTAKKRIPRDYAEWDKFDVEKECSKIDEDYKEKTVINNKAHLSKIETKIETAGLTEKEKS
FLANREKGKGNEAFYSGDYEEAVMYYTRSLSALPTAIAYNNRAQAEIKLQRWSSALEDCEKALELDPGNV
KALLRRATTYKHQNKLQEAVDDLRKVLQVEPDNDLAKKTLSEVERDLKNSEPVSELQTKGKRMVIEEVEN
SGDEGGKGSADEREDGGSDEAAMGNIQKKLMVRRSEGGRRSRRGRTPGPRAEQQGGLRETATASTGDSHY
PEEPRAADNPSGLKRRGNELFRGGQFAEAAAQYSVAIAQLEPTGSANADELSILYSNRAACYLKEGNCRD
CIQDCNRALELHPFSVKPLLRRAMAYETLEQYRNAYVDYKTVLQIDCGIQLASDSANRIARILTELDGSK
WRERLPPIPAVPTSEPLRVWLPAAETPDQDPCPNNCMPSITDEKMFQALKEEGNQLVKDKNYKDAISKYN
ECLKINSKACAIYTNRALCYLKLGQFEEAKLDCEQALQIDGENVKASHRLALAQKGLENCRESGVDPSQV
LLSPDSSEAARHLDTKNDTAPPSKGRERRRIQVQEVDGSSDEEPERPAEASATSAPARDGVEDGGSAEPA
EKLDVSKPTNAYEFGQVLSTISARKDEEACAHLLAITAPKDLPLLLSNKLEGDTFLLLIQSLKSHLVAKD
PSLVYEHLLYLSKAERFKTMLTLINKGQKEQMAQLFDGLSDTQSDGLTAEDVQALRRQYEL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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