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Report for CCDS36979.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36979.1 Public Mus musculus 14 Cog3 23 108 98 CCDS HistoryNCBI Gene:338337Re-query CCDS DB by CCDS ID:36979.1Re-query CCDS DB by GeneID:338337See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36979.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000049168.8 ENSMUSP00000045016.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000049168.8Link to Ensembl Protein Viewer:ENSMUSP00000045016.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000049168Re-query CCDS DB by Protein ID:ENSMUSP00000045016
Original member NCBI NM_177381.3 NP_796355.2 Updated not alive Link to Nucleotide Sequence:NM_177381.3Link to Protein Sequence:NP_796355.2Re-query CCDS DB by Nucleotide ID:NM_177381Re-query CCDS DB by Protein ID:NP_796355
Current member NCBI NM_177381.4 NP_796355.2 Accepted alive Link to Nucleotide Sequence:NM_177381.4Link to Protein Sequence:NP_796355.2Re-query CCDS DB by Nucleotide ID:NM_177381Re-query CCDS DB by Protein ID:NP_796355Link to BLAST:NP_796355.2

Chromosomal Locations for CCDS 36979.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 75704031 75704060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 75707090 75707188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 75707922 75708049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 75713201 75713276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 75716868 75717002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 75717109 75717197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 75719692 75719812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 75722102 75722191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 75724711 75724835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 75727708 75727813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 75729271 75729431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 75730595 75730734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 75731976 75732067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 75732911 75733037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 75733898 75733941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 75737963 75738043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 75739504 75739629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 75740536 75740628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 75741681 75741755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 75742341 75742506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 75743566 75743627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 75747053 75747199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 75754265 75754438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2487 nt):
ATGGCGGAGGCGGCGCTGCTGCTGCCGCCCGAGGCGGCGGCCGAGCGGGACGCCCGCGAGAAGCTGTCTC
TCTGGGATGGGAGACCCGACTCGATGGCGCCGCTGACAGACAGGCAGACGGACTCGGTGCTGGAGCTCAA
GGCGGCCGTGGAGAACCTGCCGGTGCCCGCCGAGCTCCCAATTGAAGATGTATGCAGCTTAGCATCCCAG
TCGCTGCCCATTGAGCTGACTGCTGTAGTGCCTGACTCTACAGAAGACATCCTGTTAAAGGGCTTCACTT
CCTTAGGAATGGAAGAAGAAAGGATTGAGACTGCGCAGCAGTTTTTCTCATGGTTTGCAAAACTGCAAAC
TCAGATGGATCAGGATGAAGGAACTAAATATAGACAGATGAGGGATTACTTGTCTGGGTTTCAGGAACAG
TGTGATGCTATACTGAATGACGTGAACAGTGCTCTGCAGCATCAGGAGTCGTTGCAGAAACAGTATCTTT
TTGTGTCCAATAAGACAGGAACTCTTCATGAAGCCTGTGAACAGCTCCTAAAAGAACAGTCGGAGCTTGC
TGATCTTGCTGAGCACATCCAACAGAAGCTGTCTTATTTTAATGAGTTGGAGACGATTAACACAAAATTG
AATTCCCCTACGTTGTCTGTGAATAGTGAAGGATTTATCCCTATGTTGGCCAAGTTAGATGATTGTATAA
CATATATTTCATCGCATCCTAATTTTAAAGATTATCCTGTATACTTACTGAAGTTTAAACAATGTCTTTC
TAAAGCTTTGCACCTCATGAAGACATATACTGTGAACACACTGCAGACTCTCACAAATCAGTTACTAAAA
AGGGACCCCTCATCAGTCCCTAATGCAGACAATGCCTTCACACTATTTTATGTGAAATTTCGAGCCGCTG
CCCCTAAAGTCAGAACTCTAATTGAACAGATAGAGCAACGATCTGAAAAGATACCCGAATACCAGCACCT
TCTCAATGACATCCACCAGTGTTACCTTGATCAGCGGGAGCTCCTTTTGGGCCCAAGTATTGCCTACACT
GTCACAGAGTTAACCAGCCAGAACAACAGAGACCATTGTGCCTTGGTTCGCAGTGGCTGTGCCTTTATGG
TCCATGTCTGCCAAGATGAGCACCAACTTTACAATGAATTTTTCACAAAGCCAACATCAAAATTAGATGA
GCTATTGGAGAAATTGTGCGTGTCGTTGTATGATGTGTTCCGGCCCTTGATCATCCATGTCATTCACTTA
GAGACTTTATCGGAGCTCTGTGGGATTCTTAAAAACGAAGTGCTTGAAGACCACGTACAGCACAACGCTG
AACAACTGGGGGCATTTGCAGCTGGAGTAAAGCAGATGTTGGAAGATGTACAAGAGAGGCTTGTGTATCG
AACCCATATCTACATTCAGACGGACATCACAGGCTACAAACCAGCGCCTGGAGATCTGGCATATCCTGAT
AAGCTAGTCATGATGGAGCAAATCGCACAGAGTTTAAAGGATGAGCAGAAGAAGGCGCCTTCAGAAGCTT
CCTTTTCAGATGTACGGTTAGAAGAAGGAGAAGCCAGTGGTTTAAGAAAGTCTGGTTCAACAGACTCCCT
CAATCCTAGACCACAGACGACGATCTCTCCAGCAGATCTTCACGGGATGTGGTATCCCACAGTTCGAAGG
ACACTTGTCTGTCTCTCCAAATTATATAGATGCATAGATAGGGCGGTGTTCCAAGGATTATCACAGGAAG
CCTTGTCTGCCTGCATACAGTCCTTGCTAGGAGCATCAGAGTCTATCAGCAAAAACAAGACTCAGATTGA
TGGACAACTTTTCTTAATTAAACACCTTTTGATTCTTCGAGAACAAATTGCTCCATTTCACACTGAATTC
ACCATTAAGGAAATTTCCCTGGACCTCAAGAAAACTAGAGATGCAGCATTTAAAATCCTGAACCCTATGA
CTGTTCCACGATTTTTTAGGCTGAATAGCAACAATGCCTTGATAGAGTTCTTGTTGGAGGGGACTCCTGA
GATCAGAGAACATTATCTTGACTCTAAGAAGGACGTAGACCGGCACCTGAAGTCAGCCTGTGAGCAGTTC
ATTCAGCAGCAGACCAGGCTGTTTGTAGAGCAGCTGGAGGAGTTCATGACAAAGGTATCAGCATTGAAAA
CCATGGCCAGCCAGGGAGGCCCCAAGTACACCCTCTCACAGCAGCCGTGGGCACAGCCAGCAAAGGTCAA
TGACCTCGTGGCCACTGCCTACAAGACAATAAAGACGAAGCTGCCGCTGACACTGAGAAGCATGGCTTTG
TATTTGTCCAATAAGGACACGGAGTTCATCTTGTTTAAGCCTGTCAGGAATAACATTCAGCAAGTCTTCC
AGAAGTTCCACGCTCTGCTAAAGGAAGAGTTCAGTTCTGAAGACATCCAAATCATTGCTTGTCCTTCCAT
GGAACAGCTGAACCTCCTGCTGTCAGTTTCAAAGTAG

Translation (828 aa):
MAEAALLLPPEAAAERDAREKLSLWDGRPDSMAPLTDRQTDSVLELKAAVENLPVPAELPIEDVCSLASQ
SLPIELTAVVPDSTEDILLKGFTSLGMEEERIETAQQFFSWFAKLQTQMDQDEGTKYRQMRDYLSGFQEQ
CDAILNDVNSALQHQESLQKQYLFVSNKTGTLHEACEQLLKEQSELADLAEHIQQKLSYFNELETINTKL
NSPTLSVNSEGFIPMLAKLDDCITYISSHPNFKDYPVYLLKFKQCLSKALHLMKTYTVNTLQTLTNQLLK
RDPSSVPNADNAFTLFYVKFRAAAPKVRTLIEQIEQRSEKIPEYQHLLNDIHQCYLDQRELLLGPSIAYT
VTELTSQNNRDHCALVRSGCAFMVHVCQDEHQLYNEFFTKPTSKLDELLEKLCVSLYDVFRPLIIHVIHL
ETLSELCGILKNEVLEDHVQHNAEQLGAFAAGVKQMLEDVQERLVYRTHIYIQTDITGYKPAPGDLAYPD
KLVMMEQIAQSLKDEQKKAPSEASFSDVRLEEGEASGLRKSGSTDSLNPRPQTTISPADLHGMWYPTVRR
TLVCLSKLYRCIDRAVFQGLSQEALSACIQSLLGASESISKNKTQIDGQLFLIKHLLILREQIAPFHTEF
TIKEISLDLKKTRDAAFKILNPMTVPRFFRLNSNNALIEFLLEGTPEIREHYLDSKKDVDRHLKSACEQF
IQQQTRLFVEQLEEFMTKVSALKTMASQGGPKYTLSQQPWAQPAKVNDLVATAYKTIKTKLPLTLRSMAL
YLSNKDTEFILFKPVRNNIQQVFQKFHALLKEEFSSEDIQIIACPSMEQLNLLLSVSK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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