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Report for CCDS36619.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36619.1 Public Mus musculus 13 Btn2a2 23 108 98 CCDS HistoryNCBI Gene:238555Re-query CCDS DB by CCDS ID:36619.1Re-query CCDS DB by GeneID:238555See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36619.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000110432.1 ENSMUSP00000106062.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110432.1Link to Ensembl Protein Viewer:ENSMUSP00000106062.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000110432Re-query CCDS DB by Protein ID:ENSMUSP00000106062
Original member Current member EBI ENSMUST00000110433.9 ENSMUSP00000106063.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110433.9Link to Ensembl Protein Viewer:ENSMUSP00000106063.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000110433Re-query CCDS DB by Protein ID:ENSMUSP00000106063
Original member Current member NCBI NM_001289615.1 NP_001276544.1 Accepted alive Link to Nucleotide Sequence:NM_001289615.1Link to Protein Sequence:NP_001276544.1Re-query CCDS DB by Nucleotide ID:NM_001289615Re-query CCDS DB by Protein ID:NP_001276544Link to BLAST:NP_001276544.1
Original member Current member NCBI NM_175938.3 NP_787952.2 Accepted alive Link to Nucleotide Sequence:NM_175938.3Link to Protein Sequence:NP_787952.2Re-query CCDS DB by Nucleotide ID:NM_175938Re-query CCDS DB by Protein ID:NP_787952Link to BLAST:NP_787952.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001276544.1 514 A4QPC6-1 514 100% 0 0
NP_787952.2 514 A4QPC6-1 514 100% 0 0

Chromosomal Locations for CCDS 36619.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 23478234 23478841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 23480450 23480476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 23480567 23480587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 23481772 23481945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 23482719 23483000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 23486129 23486476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 23487833 23487917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1545 nt):
ATGGAGCCTACAACTTCCCTGCGTTCTTGCCCGATAGCCTCCCTTCTCTTCTTCTTGGTCCTCAGCCTGT
TTGTGCTGGTCTCAGCCCAGTTTACTGTCATAGGACCAGCTGAGCCCATCCTGGCCATGGTAGGAGAGAA
TACCACACTACACTGCCACCTGTCACCAGAGAGAAATGCCGAAGAGATGGAGGTGCGGTGGTTCCGGTGG
CGTTTCTTCCCTGCAGTGCTGGTGTACAGAGGCCATCAAGAGAGACCAGAGGAGCAGATGGTGGCATACC
GAGGAAGAACCACCTTCATGCGCACAGACATCAGCAAGGGAAGAGTTGCGCTCATTATCCACAATGTCAC
AGCCTATGACAATGGCATCTACTGCTGTTACTTCCAGGAAGGCAGGTCCTATGACCAGGCAACCATGAAG
CTTATGGTGGCAAGCCTTGGCTCTGAGCCACTTATTAAAATGAAGACACTTGAGGATGGGAGCATCTTGC
TAGAGTGCACATCTGAAGGGTGGTACCCAGAGCCCCGAGCTGTGTGGAGAGACCCCTATGATGAAGTTGT
ACCTGCCCTGGAGGAGGAGTATACAGCTGACAGAGAAGGCCTCTTCACAGTCACCATGACTATAATCATC
AGGGACTGCTCTGTGAGGAACATGACCTGCTCTGTCAATAACACTCTGCTCAGCCAGGAGGTGGAAAGTG
TGATTCTCATTCCAGAATCCTTCGTGCCCAGCCTTCCTCTGTGGATGGTGGCTGTGGCTGTCACTCTGCC
TGTAGTAATGCTGATTCTCCTCACATCTGGAAGCATCTGCCTTGTCAAGAAACACCGCAGGAAGAAATCT
ATTCTGTCAGCTGAAAAAGAAGCCGAATATGAAGAGAAGGAAGCTGCACGGCAACTTCAAGAGGAACTGC
GATGGAGACGAACCCTCTTACATGCTGCTGACGTGGTCCTGGACCCAGATACAGCTCATCCTGAGCTCTT
CCTGTCAGATGACCAGAGAAGTGTAATACGAGGCTCTTCGAGGCAGAGTGTGCCTGACAACCCTGAGAGA
TTTGACTGCCGTCCATGTGTCCTGGGCAGGGAAAGCTTCTCCTCAGGGAAGCATTACTGGGAGGTGGAGG
TGGAAAATGTAATGGTGTGGGCCATTGGTGTTTGTAGAGACAGCGTGGAAAGGAAAGGGGAGGCCCTGTT
GGTTCCTCAGAATGGCTTCTGGACCCTGGAGATGTTTGGAAGCCAGTATCGAGCCCTGTCCTCCCCAGAA
AAGATCATACCTCTGAAAGAGCGTCTTCACCGTATAGCTGTCTTCCTGGACTGTGAGGGTGGAGATATTT
CTTTCTACAACATGAGAGACAGATCACACATTTACACATGTCCTCCTGTGACTTTCACTGGGCCCCTGAG
ACCCTTCTTTAGGCTTGGTTCTGATGACAGTCCCCTGTTCATCTGTCCAGCATTCACAGGGGCACAGGGA
GTTACAATACCTGAGGGTGGCTTATTCCTATATAAGACAAGACCAATTTCTCAGAGCCTTGTAAGGAAGC
CATAG

Translation (514 aa):
MEPTTSLRSCPIASLLFFLVLSLFVLVSAQFTVIGPAEPILAMVGENTTLHCHLSPERNAEEMEVRWFRW
RFFPAVLVYRGHQERPEEQMVAYRGRTTFMRTDISKGRVALIIHNVTAYDNGIYCCYFQEGRSYDQATMK
LMVASLGSEPLIKMKTLEDGSILLECTSEGWYPEPRAVWRDPYDEVVPALEEEYTADREGLFTVTMTIII
RDCSVRNMTCSVNNTLLSQEVESVILIPESFVPSLPLWMVAVAVTLPVVMLILLTSGSICLVKKHRRKKS
ILSAEKEAEYEEKEAARQLQEELRWRRTLLHAADVVLDPDTAHPELFLSDDQRSVIRGSSRQSVPDNPER
FDCRPCVLGRESFSSGKHYWEVEVENVMVWAIGVCRDSVERKGEALLVPQNGFWTLEMFGSQYRALSSPE
KIIPLKERLHRIAVFLDCEGGDISFYNMRDRSHIYTCPPVTFTGPLRPFFRLGSDDSPLFICPAFTGAQG
VTIPEGGLFLYKTRPISQSLVRKP


Links Key
 Links to:   History report
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  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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