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Report for CCDS36330.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36330.1 Public Mus musculus 11 Krtap17-1 23 108 98 CCDS HistoryNCBI Gene:77914Re-query CCDS DB by CCDS ID:36330.1Re-query CCDS DB by GeneID:77914See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36330.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000105049.1 ENSMUSP00000100670.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105049.1Link to Ensembl Protein Viewer:ENSMUSP00000100670.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000105049Re-query CCDS DB by Protein ID:ENSMUSP00000100670
Original member Current member NCBI NM_001099774.2 NP_001093244.1 Accepted alive Link to Nucleotide Sequence:NM_001099774.2Link to Protein Sequence:NP_001093244.1Re-query CCDS DB by Nucleotide ID:NM_001099774Re-query CCDS DB by Protein ID:NP_001093244Link to BLAST:NP_001093244.1

Chromosomal Locations for CCDS 36330.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 99993610 99993939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (330 nt):
ATGGGATGCTGCCCGGGAGACTGCCTCAATTGCTGCTCCCAGGAACAGGACTGCTGTGAGGAGTGTTGCT
GCCAGCAGGGCTGCTGCGGCTGCTGTGGCTGTTGTGGCTCCTGCTGTGGCTGCGGAGGTTCTAGCTGCGG
AGGAGGCTGCTGCGGGTCTGGCTGCGGGGGATGCGGAGGCTGCGGGTCTAGCTGCTGCGGATCTGGCTGC
GGAGGAGGCTGCGGGGGCTGTGGAGGCGGCTGCTGTGGCGGCTCCGGATGCTGCGGTGGTGGCGGCGGGT
GCTGTGGTCCAGTGTGCTGTCAGCCCACACCTGTGTGTGAGACAAAATGA

Translation (109 aa):
MGCCPGDCLNCCSQEQDCCEECCCQQGCCGCCGCCGSCCGCGGSSCGGGCCGSGCGGCGGCGSSCCGSGC
GGGCGGCGGGCCGGSGCCGGGGGCCGPVCCQPTPVCETK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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