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Report for CCDS36163.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36163.1 Public Mus musculus 11 Lypd8 23 108 98 CCDS HistoryNCBI Gene:70163Re-query CCDS DB by CCDS ID:36163.1Re-query CCDS DB by GeneID:70163See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36163.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000013787.10 ENSMUSP00000013787.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000013787.10Link to Ensembl Protein Viewer:ENSMUSP00000013787.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000013787Re-query CCDS DB by Protein ID:ENSMUSP00000013787
Original member Current member EBI ENSMUST00000108826.2 ENSMUSP00000104454.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108826.2Link to Ensembl Protein Viewer:ENSMUSP00000104454.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000108826Re-query CCDS DB by Protein ID:ENSMUSP00000104454
Original member NCBI NM_001083884.1 NP_001077353.1 Updated not alive Link to Nucleotide Sequence:NM_001083884.1Link to Protein Sequence:NP_001077353.1Re-query CCDS DB by Nucleotide ID:NM_001083884Re-query CCDS DB by Protein ID:NP_001077353
Current member NCBI NM_001083884.2 NP_001077353.1 Accepted alive Link to Nucleotide Sequence:NM_001083884.2Link to Protein Sequence:NP_001077353.1Re-query CCDS DB by Nucleotide ID:NM_001083884Re-query CCDS DB by Protein ID:NP_001077353Link to BLAST:NP_001077353.1
Original member NCBI NM_001330197.1 NP_001317126.1 Updated not alive Link to Nucleotide Sequence:NM_001330197.1Link to Protein Sequence:NP_001317126.1Re-query CCDS DB by Nucleotide ID:NM_001330197Re-query CCDS DB by Protein ID:NP_001317126
Current member NCBI NM_001330197.2 NP_001317126.1 Accepted alive Link to Nucleotide Sequence:NM_001330197.2Link to Protein Sequence:NP_001317126.1Re-query CCDS DB by Nucleotide ID:NM_001330197Re-query CCDS DB by Protein ID:NP_001317126Link to BLAST:NP_001317126.1
Original member NCBI NM_027339.2 NP_081615.2 Updated not alive Link to Nucleotide Sequence:NM_027339.2Link to Protein Sequence:NP_081615.2Re-query CCDS DB by Nucleotide ID:NM_027339Re-query CCDS DB by Protein ID:NP_081615
Current member NCBI NM_027339.3 NP_081615.2 Accepted alive Link to Nucleotide Sequence:NM_027339.3Link to Protein Sequence:NP_081615.2Re-query CCDS DB by Nucleotide ID:NM_027339Re-query CCDS DB by Protein ID:NP_081615Link to BLAST:NP_081615.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001077353.1 255 Q9D7S0 255 100% 0 0
NP_001317126.1 255 Q9D7S0 255 100% 0 0
NP_081615.2 255 Q9D7S0 255 100% 0 0

Chromosomal Locations for CCDS 36163.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 58382333 58382387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 58382752 58382865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 58384610 58384768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 58386722 58386856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 58390077 58390381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (768 nt):
ATGAGAGGCGTCTTCATCGCTGGTGTCATTGCGGCATTCGCCATCACAGTTGTAGACTCCCTGAATTGTA
CACAGTGTTATACGTACAATAGCACCTGTGATGGCCAGGCCACTGAATGCAATGAGCAGTCCTTCAGTTG
TGTGGAGTCCTCTATCAACTCCACTCTAGGAGGGTTCCTGCATGTGTACCAGAACAAGTTCTGCTCCGCA
TCGAATTGCACCGAGAACAGCACGGAGGTGGCCTTCACTGTCCATCTATTTGATGACCAAAGATACCATT
TTGCAAGCCAGTGCTGCCAAGGAGAGTCCTGCAATGCCACCCACTCTGAATCCGGAACACAGAATGTAAC
TGACATGCAGTGCATGTCTTGCTATGGTCACAACAAAACACTCTGCGAGGAGAAACCCCAAAAGTGTTAC
GAAGGAGAACAATGTGTCTTCATCATTGCGGAGATGGTAAATGGCTCTGGCAGAGTGGAGCTGAAGGGCT
GTTCTGATATCAGCAACTCTACTTGTCAATTCCTGTCCCCTGGGAACACAACAGTTGGAGAGTTTGTTTT
CAAGTCGGTTGAATGTACGCAACCCACTGAGTATACCAACTCGACCACCACTATCCCACCAATCACCAAC
ACTTCCCTCACCTCTGTTACCCGACCAGGCATCAAAACTTCCCCCGCCTCTGTTACCCCACAGGCTAGCA
TGGGCACCAAAGCTTCCTTCACCTCCTCTATCTTCGGCAGCCTTCTTCTTCTGAAGCTGCTGTTCTGA

Translation (255 aa):
MRGVFIAGVIAAFAITVVDSLNCTQCYTYNSTCDGQATECNEQSFSCVESSINSTLGGFLHVYQNKFCSA
SNCTENSTEVAFTVHLFDDQRYHFASQCCQGESCNATHSESGTQNVTDMQCMSCYGHNKTLCEEKPQKCY
EGEQCVFIIAEMVNGSGRVELKGCSDISNSTCQFLSPGNTTVGEFVFKSVECTQPTEYTNSTTTIPPITN
TSLTSVTRPGIKTSPASVTPQASMGTKASFTSSIFGSLLLLKLLF


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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