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Report for CCDS35901.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35901.1 Public Mus musculus 10 Fam184a 23 108 98 CCDS HistoryNCBI Gene:75906Re-query CCDS DB by CCDS ID:35901.1Re-query CCDS DB by GeneID:75906See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35901.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020003.14 ENSMUSP00000020003.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020003.14Link to Ensembl Protein Viewer:ENSMUSP00000020003.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000020003Re-query CCDS DB by Protein ID:ENSMUSP00000020003
Original member NCBI NM_001081428.1 NP_001074897.1 Updated not alive Link to Nucleotide Sequence:NM_001081428.1Link to Protein Sequence:NP_001074897.1Re-query CCDS DB by Nucleotide ID:NM_001081428Re-query CCDS DB by Protein ID:NP_001074897
Current member NCBI NM_001081428.2 NP_001074897.1 Accepted alive Link to Nucleotide Sequence:NM_001081428.2Link to Protein Sequence:NP_001074897.1Re-query CCDS DB by Nucleotide ID:NM_001081428Re-query CCDS DB by Protein ID:NP_001074897Link to BLAST:NP_001074897.1

Chromosomal Locations for CCDS 35901.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 53633634 53633715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 53635232 53635434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 53638177 53638281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 53640945 53641062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 53646983 53647129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 53647572 53647756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 53649102 53649229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 53652300 53652453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 53654967 53655179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 53674566 53674716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 53675136 53675257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 53677731 53677892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 53684236 53684358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 53689951 53690148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 53694695 53694876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 53697124 53697259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 53698489 53699343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 53750713 53750880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3432 nt):
ATGGCGACCCCGGGCATGAGCTGGCAACATCACTATTACGGTAGCTCCACGTCCGGGCCGGCCAAATTCG
CGACCTCCCCAGCTGCCGCTCAGCTGGCAGGGCACAACATGGACTACAGCCAGGACATGCACCTGAAAAT
GAGCAAGAAGATCGCCCAGCTCACCAAGGTAATATATGCTTTGAATACTAGAAATGATGAACACGATGCT
GCGATTCAGGCCCTCAAAGATGCCCATGAAGAAGAAATCCAACAAATCCTTGCAGAAACAAGAGAAAAAA
TACTGCTATACAAAAGCAAGGTTACCGAAGAGTTAGACCTTAGGAGAAAGATTCAAGTTTTGGAAGCGTC
TTTAGAAGATCACATGAAAATGAAGCAGGAGGCTTTGACCGAGTTTGAAGCCTATAAGCGCAGAGTTGAG
GACATGCAGCTTTGTGCAGAGGCCCAGCATGTTCAGCGCATAGTAACCATGTCCCGGGAGGTCGAAGAGA
TTAGGAAGAAATTCGAAGAAAGGTTGCGGAGCTTTGGGCAGCTCCAGGTTCAGTTTGAAAATGACAAACA
GGCGGCTCTGGAAGATCTGAGAACCACTCACAGGCTCGAAGTCCAAGAGCTGTTGAAGTCACAGCAGAAC
CACAGCTCCTCCGTGAAACTGGGGCAAGAGAAAGCTGAGGGACTGCACAGGATGGAGGTGGAGGCCTTGA
ACAACACGGTCAAGGAGCTGAGACTCGAAAAGAAACAGCTCATCGAGGAGTATGAGGGCAAGCTGAGCAA
GGCCCAAGTGTTTTATGAGCGTGAGCTTGATAACTTGAAAAGGTCACAGCTCTTCACAGCCGAAAGCTTG
CAGGCCAGCAGGGACAAGGAGGCCGATCTTCGCAAAGAGTTCCAGGGACAAGAAGCCATTTTACGAAAAA
CCATAGGAAAACTGAAGACAGAGCTGCAGATGGTGCAGGATGAAGCTAGCAGCCTTCTTGACAAATGCCA
AAAGTTGCAGATGGCTCTGGCCACAGCAGAGAACAATGTACAGGTTCTTCAAAAACAGCTTGATGATGCC
AAGGAGGGAGAAATGGCCTTGTTAAGCAAGCACAAGGAAGTGGAGAGCGAGCTAGCAGCTGCCCGGGAGC
GATTGCAAGAGCAAGCTTCAGATCTTGTTCTCAAAGCTAGTCATATTGGAATGCTTCAGGCAACTCAGAT
GACCCAAGAAGTTACCATTAAAGATTTAGAATCAGAAAAATCCAGAGCCAACGAGCGATTGTGTCAGCTG
GAAGAGGAAAGAGCTTTTTTGCAGAGCAGAACGCAGAGTCTGGATGAAGAACAGAAGCAGCAGGTGCTGG
AGCTGGAGAAGAAAGTAAATGAAGCAAAGAGAACTCAGCAAGAATATTACGAAATGGAGCTTAAGAACCT
GCAAAATCGATTGGAAGGAGAGGTGGCTCAGTTAAACGAGGCCCATGGGAAGACTTTGGAAGAATTAGCT
CGGAAGCACCACATGGCGATTGAAGCTGTCCATAGCAATGCAAGCAGAGATAAGATAAAGCTACAGACGG
AATTGGAGGAACAATATAAAAAGGAGAAACTGAGTCTGGAAGAGGATAAAAATCAGCTCCAACTAGAGCT
GGAAAGTCTAAAGCAAGCTCTGGGAGACAAGCTGACTTCAGCCAATCAGGAGATTGGCCGCCTCCAGGAT
CTCGTAAGGAAGAGTGAACAAGGTCTCGGCTCTGCCGAAGGACTCATTTCTAGTCTTCAGGATTCCCAGG
AAAGGCTTCAGAGTGAGCTGGACCTGACAAAAGGCAGGCTGAAGGAGACCAAGGATGCCCTATTAAATGT
TGAGGCTGAGCTACAACAAGAACGTCATGAGCATGAGCAGACGCTGGCCACCATGAAGGAAGAAGAGAAG
CTGAGGGTGGACAGAATGGCCCATGACCTGGAGATCAAGTGGACTGAAAATCTTAGACAAGAGTGCTCCA
AGCTTCGCCAGGAGTTGAGGCTTCAACACGAAGAAGATAAAAAGTCTGCCATGTCTCAACTGTTGCAGCT
GAAAGAGAGAGAGAAAAATGCCGCCAGGGACTCATGGCAGAAGAAGGTGGAAGATCTCTTAAACCAGATC
TCCCTGCTGAAGCAGAACCTGGAGCTGCAGCTTTGCCAGTCCCAGACGTCTCTGCAGCAGCTGCAAGCGC
AGTTCACGCAAGAGCGCCAGCGACTCACGCAGGAGCTGGAGGAGCTGGAGGAGCAGCATCAGCAGAGGCA
CAAGTCCCTCAAAGAAGCACACGTCCTCGCGTTCCAGACCATGGAAGAAGAGAAGGAAAAGGAGCAAAGG
GCTCTGGAGACTCACTTACAGCAAAAGCATTCTGCAGAGCTGCAGTCACTGAAAGATGCGCACCGAGAGT
CGATGGAGGGCTTCCGCGTGGAGATGGAGCAGGAGCTTCAGACACTCCGGTTTGAGTTAGAAGACGAGGG
CAAGGCTATGCTTGCTTCCTTGCGTTCTGAACTAAACCATCAACATGCGGCTTCCATTGATTTATTACGG
CATAGTCACCATCAAGAACTGGCAGCAGCTAAGATGGAATTAGAGAGAAGCATAGACATCAGCCGCAGGC
AGAGTAAGGAGCACATGTGTAGGATAAGCGATCTGCAGGAGGAGCTGAGGCACCGGGAGCACCACATCAC
AGACTTGGATAAGGAGGTCCAGCACCTCCATGAAAACATAAATACCCTAACGAAAGAACTGGAACTCAAG
GGGAAAGAGATTCTCAGAGTACGGAGTGAATCCAACCAGCAAATGAGGTTGCATGAACAAGATTTAAACA
AGAGACTTGAGAAAGAGCTGGATGTCATGACAGCAGACCACCTCAGAGAGAAAAATATCATGCGGGCAGA
TTTTAATAAGACTAATGAGCTACTCAAGGAAATAAATGCAGCTTTACAAGTGTCACTAGAAGATATGGAA
GAGAAGTATCTAATGAGAGAATCAAGGCCAGAAGATATACAGATGATTGCAGAATTAAAATCCCTGATAA
CAGAACGAGACCAGGTCATAAAGAAACTCATTGAGGATAATAAATTTTACCAGCTGGAATTAGTCAATCG
AGAAACTAACTTCAACAAAATATTTAACACAAGTCCTACTGTTGGTGTTATTAACCCATTGGCTAAGCAA
AAGAAGAAGAATGATAAGTCAGCAGCAAACAGGTTTGTGAGTGTTCCCAACCTCAGTGCTCTGGAATCCA
GTGGCATGGGCAATGGACATCCTACCCGCCTGGAACCCATTCCCAATTCTCCAGCCCATGATGTTGAGTT
CAACAGCAACAAGCCTCTTCCACAGCCTTTGCCACCCAAAGAGCCCAAGACATTTTTGAGTCCTCCTCAG
AGTGAAGCTTCCCCAGTGGCTTCTCCAGACCCCCAGCGCCAGGAGTGGTTTGCCCGGTACTTCACATTCT
GA

Translation (1143 aa):
MATPGMSWQHHYYGSSTSGPAKFATSPAAAQLAGHNMDYSQDMHLKMSKKIAQLTKVIYALNTRNDEHDA
AIQALKDAHEEEIQQILAETREKILLYKSKVTEELDLRRKIQVLEASLEDHMKMKQEALTEFEAYKRRVE
DMQLCAEAQHVQRIVTMSREVEEIRKKFEERLRSFGQLQVQFENDKQAALEDLRTTHRLEVQELLKSQQN
HSSSVKLGQEKAEGLHRMEVEALNNTVKELRLEKKQLIEEYEGKLSKAQVFYERELDNLKRSQLFTAESL
QASRDKEADLRKEFQGQEAILRKTIGKLKTELQMVQDEASSLLDKCQKLQMALATAENNVQVLQKQLDDA
KEGEMALLSKHKEVESELAAARERLQEQASDLVLKASHIGMLQATQMTQEVTIKDLESEKSRANERLCQL
EEERAFLQSRTQSLDEEQKQQVLELEKKVNEAKRTQQEYYEMELKNLQNRLEGEVAQLNEAHGKTLEELA
RKHHMAIEAVHSNASRDKIKLQTELEEQYKKEKLSLEEDKNQLQLELESLKQALGDKLTSANQEIGRLQD
LVRKSEQGLGSAEGLISSLQDSQERLQSELDLTKGRLKETKDALLNVEAELQQERHEHEQTLATMKEEEK
LRVDRMAHDLEIKWTENLRQECSKLRQELRLQHEEDKKSAMSQLLQLKEREKNAARDSWQKKVEDLLNQI
SLLKQNLELQLCQSQTSLQQLQAQFTQERQRLTQELEELEEQHQQRHKSLKEAHVLAFQTMEEEKEKEQR
ALETHLQQKHSAELQSLKDAHRESMEGFRVEMEQELQTLRFELEDEGKAMLASLRSELNHQHAASIDLLR
HSHHQELAAAKMELERSIDISRRQSKEHMCRISDLQEELRHREHHITDLDKEVQHLHENINTLTKELELK
GKEILRVRSESNQQMRLHEQDLNKRLEKELDVMTADHLREKNIMRADFNKTNELLKEINAALQVSLEDME
EKYLMRESRPEDIQMIAELKSLITERDQVIKKLIEDNKFYQLELVNRETNFNKIFNTSPTVGVINPLAKQ
KKKNDKSAANRFVSVPNLSALESSGMGNGHPTRLEPIPNSPAHDVEFNSNKPLPQPLPPKEPKTFLSPPQ
SEASPVASPDPQRQEWFARYFTF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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