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Report for CCDS35865.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35865.1 Public Mus musculus 10 Raet1e 23 108 98 CCDS HistoryNCBI Gene:379043Re-query CCDS DB by CCDS ID:35865.1Re-query CCDS DB by GeneID:379043See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35865.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000065527.10 ENSMUSP00000066627.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000065527.10Link to Ensembl Protein Viewer:ENSMUSP00000066627.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000065527Re-query CCDS DB by Protein ID:ENSMUSP00000066627
Original member Current member EBI ENSMUST00000178026.1 ENSMUSP00000136032.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000178026.1Link to Ensembl Protein Viewer:ENSMUSP00000136032.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000178026Re-query CCDS DB by Protein ID:ENSMUSP00000136032
Original member Current member EBI ENSMUST00000181645.7 ENSMUSP00000138022.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000181645.7Link to Ensembl Protein Viewer:ENSMUSP00000138022.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000181645Re-query CCDS DB by Protein ID:ENSMUSP00000138022
Original member Current member NCBI NM_001359808.1 NP_001346737.1 Accepted alive Link to Nucleotide Sequence:NM_001359808.1Link to Protein Sequence:NP_001346737.1Re-query CCDS DB by Nucleotide ID:NM_001359808Re-query CCDS DB by Protein ID:NP_001346737Link to BLAST:NP_001346737.1
Original member Current member NCBI NM_001359809.1 NP_001346738.1 Accepted alive Link to Nucleotide Sequence:NM_001359809.1Link to Protein Sequence:NP_001346738.1Re-query CCDS DB by Nucleotide ID:NM_001359809Re-query CCDS DB by Protein ID:NP_001346738Link to BLAST:NP_001346738.1
Original member Current member NCBI NM_198193.3 NP_937836.1 Accepted alive Link to Nucleotide Sequence:NM_198193.3Link to Protein Sequence:NP_937836.1Re-query CCDS DB by Nucleotide ID:NM_198193Re-query CCDS DB by Protein ID:NP_937836Link to BLAST:NP_937836.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001346737.1 251 Q9CZQ6 251 100% 0 0
NP_001346738.1 251 Q9CZQ6 251 100% 0 0
NP_937836.1 251 Q9CZQ6 251 100% 0 0

Chromosomal Locations for CCDS 35865.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 22174320 22174410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 22180618 22180872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 22181125 22181388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 22181946 22182091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (756 nt):
ATGGCCAAGGCAGCAGTGACCAAGCGCCATCATTTTATGATTCAGAAGCTGTTAATTCTACTGAGCTATG
GATACACCAACGGGCTGGATGATGCACACTCTCTTAGGTGCAACTTGACCATCAAGGATCCTACCTCAGC
AGACCTTCCCTGGTGTGACGTGAAGTGCTCAGTGGATGAAATAACTATCCTCCATTTAAATAACATAAAC
AAGACCATGACTTCAGGTGACCCAGGGAAGATGGCAAATGCCACTGGCAAATGTTTGACACAACCTCTGA
ACGATTTGTGCCAGGAGTTGAGGGACAAGGTGTCTAACACCAAAGTGGACACTCACAAGACCAATGGTTA
CCCACATTTACAAGTCACCATGATTTATCCGCAAAGCCAGGGCCAAACTCCTAGTGCCACCTGGGAATTC
AACATCAGTGACAGTTACTTCTTCACCTTCTACACAGAGAATATGAGCTGGAGATCAGCTAATGATGAAT
CAGGGGTTATCATGAATAAATGGAAAGATGATGGGGACCTTGTGCAACAATTGAAATACTTCATACCCCA
ATGCAGACAGAAAATTGATGAATTCTTAAAGCAGTCCAAGGAAAAGCCAAGATCAACCTCAAGGTCCCCC
AGTATCACCCAGCTTACATCAACTTCCCCGCTTCCACCTCCCAGCCACTCTACTTCTAAGAAAGGATTTA
TCTCTGTGGGACTCATCTTCATATCTTTATTATTTGCATTTGCATTTGCGATGTGA

Translation (251 aa):
MAKAAVTKRHHFMIQKLLILLSYGYTNGLDDAHSLRCNLTIKDPTSADLPWCDVKCSVDEITILHLNNIN
KTMTSGDPGKMANATGKCLTQPLNDLCQELRDKVSNTKVDTHKTNGYPHLQVTMIYPQSQGQTPSATWEF
NISDSYFFTFYTENMSWRSANDESGVIMNKWKDDGDLVQQLKYFIPQCRQKIDEFLKQSKEKPRSTSRSP
SITQLTSTSPLPPPSHSTSKKGFISVGLIFISLLFAFAFAM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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