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Report for CCDS35779.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35779.1 Public Mus musculus 1 Ly9 23 108 98 CCDS HistoryNCBI Gene:17085Re-query CCDS DB by CCDS ID:35779.1Re-query CCDS DB by GeneID:17085See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35779.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000068878.13 ENSMUSP00000069319.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000068878.13Link to Ensembl Protein Viewer:ENSMUSP00000069319.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000068878Re-query CCDS DB by Protein ID:ENSMUSP00000069319
Original member NCBI NM_008534.3 NP_032560.2 Updated not alive Link to Nucleotide Sequence:NM_008534.3Link to Protein Sequence:NP_032560.2Re-query CCDS DB by Nucleotide ID:NM_008534Re-query CCDS DB by Protein ID:NP_032560
Current member NCBI NM_008534.4 NP_032560.2 Accepted alive Link to Nucleotide Sequence:NM_008534.4Link to Protein Sequence:NP_032560.2Re-query CCDS DB by Nucleotide ID:NM_008534Re-query CCDS DB by Protein ID:NP_032560Link to BLAST:NP_032560.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032560.2 654 Q01965 654 100% 0 0

Chromosomal Locations for CCDS 35779.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 171589060 171589125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171593423 171593494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171593855 171594189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171596490 171596543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171597684 171597782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171599647 171599916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171600982 171601320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171601787 171602062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171604990 171605319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171607200 171607323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1965 nt):
ATGGCGGATCTAAAGAGATATTGGTGTGACTGGGCTCTAGGTCCACTCTCTGAAAATCCAAGAATGAGTC
AGCAGCAGATATTTTCTCCCATTCTTTGGATTCCTCTCCTCTTCCTACTCATGGGGCTCGGAGCCTCTGG
AAAGGAAACACCTCCAACAGTGATATCAGGGATGCTAGGGGGTTCTGTGACTTTCTCCCTAAACATCTCA
AAGGATGCAGAGATTGAGCATATCATCTGGAATTGTCCCCCAAAGGCTCTTGCTTTAGTATTCTACAAAA
AAGATATAACTATTCTGGACAAAGGATATAATGGCAGACTCAAAGTCAGCGAAGATGGCTACTCCTTGTA
CATGAGCAACCTAACCAAAAGTGATTCAGGATCCTACCATGCTCAGATAAACCAAAAGAATGTTATCCTC
ACCACAAATAAAGAGTTCACACTGCACATCTATGAGAAGCTCCAGAAGCCTCAGATCATCGTGGAATCTG
TGACCCCATCCGATACTGATTCCTGCACCTTCACCCTAATCTGCACTGTAAAGGGGACAAAGGACAGTGT
CCAGTACAGCTGGACCCGAGAGGACACCCATTTAAATACATACGATGGAAGCCACACCCTCAGGGTTTCC
CAGAGTGTCTGTGACCCCGACCTACCCTATACCTGCAAAGCCTGGAATCCAGTCAGCCAAAACAGCTCCC
AACCTGTCCGCATCTGGCAATTCTGCACAGGAGCCTCCAGAAGAAAAACAGCAGCGGGGAAGACTGTGGT
AGGAATCCTGGGAGAGCCAGTGACCCTGCCCTTGGAATTTCGGGCCACTCGGGCCACAAAGAATGTTGTC
TGGGTGTTTAACACGTCGGTTATCAGCCAAGAACGGAGAGGAGCAGCAACAGCGGATTCTCGCCGTAAGC
CCAAAGGTTCTGAAGAACGGAGGGTGAGGACCTCTGACCAGGACCAATCCCTGAAGATCAGCCAGCTGAA
GATGGAGGACGCGGGCCCCTACCATGCCTATGTGTGCTCAGAGGCCTCCCGAGACCCCAGTGTGAGACAT
TTCACCTTGCTTGTCTACAAGAGACTGGAGAAGCCCAGTGTCACCAAGAGTCCTGTGCACATGATGAACG
GAATCTGCGAGGTTGTCCTGACCTGTTCAGTGGACGGTGGTGGAAACAATGTGACATACACATGGATGCC
TCTACAAAACAAAGCTGTCATGTCCCAAGGGAAGTCGCACCTCAACGTCTCCTGGGAAAGTGGTGAACAC
CTGCCCAACTTCACATGCACAGCCCATAACCCTGTCAGCAACAGCTCCAGCCAGTTTTCTTCTGGGACCA
TCTGTTCAGGCCCTGAGAGAAACAAGAGGTTTTGGCTCCTGCTCCTCCTGGTTTTGCTCTTGTTGATGCT
CATTGGCGGTTACTTCATTTTGAGGAAAAAGAAGCAGTGTTCGTCTTTGGCCACCAGGTACAGACAAGCG
GAGGTCCCAGCTGAAATACCAGAAACCCCAACTGGCCATGGACAATTTTCTGTGCTCTCCCAACGGTATG
AGAAACTAGACATGTCTGCTAAGACCACCAGGCATCAGCCTACACCCACCTCAGATACCAGCTCTGAGAG
CAGCGCAACAACAGAAGAGGATGACGAAAAGACCAGAATGCACAGCACTGCTAATAGTAGAAATCAGGTG
TATGACTTGGTCACCCATCAGGACATTGCACATGCCTTGGCCTATGAGGGGCAAGTAGAATATGAAGCAA
TCACTCCATATGATAAAGTGGATGGGTCTATGGATGAAGAGGACATGGCATATATACAAGTGTCCCTGAA
TGTGCAGGGAGAGACCCCACTTCCTCAGAAGAAAGAAGACTCAAATACAATCTACTGCTCTGTGCAGAAG
CCTAAAAAGACGGCACAAACACCACAGCAAGATGCTGAGTCTCCTGAAACCCCTACCTATGAAAATTTCA
CCTGA

Translation (654 aa):
MADLKRYWCDWALGPLSENPRMSQQQIFSPILWIPLLFLLMGLGASGKETPPTVISGMLGGSVTFSLNIS
KDAEIEHIIWNCPPKALALVFYKKDITILDKGYNGRLKVSEDGYSLYMSNLTKSDSGSYHAQINQKNVIL
TTNKEFTLHIYEKLQKPQIIVESVTPSDTDSCTFTLICTVKGTKDSVQYSWTREDTHLNTYDGSHTLRVS
QSVCDPDLPYTCKAWNPVSQNSSQPVRIWQFCTGASRRKTAAGKTVVGILGEPVTLPLEFRATRATKNVV
WVFNTSVISQERRGAATADSRRKPKGSEERRVRTSDQDQSLKISQLKMEDAGPYHAYVCSEASRDPSVRH
FTLLVYKRLEKPSVTKSPVHMMNGICEVVLTCSVDGGGNNVTYTWMPLQNKAVMSQGKSHLNVSWESGEH
LPNFTCTAHNPVSNSSSQFSSGTICSGPERNKRFWLLLLLVLLLLMLIGGYFILRKKKQCSSLATRYRQA
EVPAEIPETPTGHGQFSVLSQRYEKLDMSAKTTRHQPTPTSDTSSESSATTEEDDEKTRMHSTANSRNQV
YDLVTHQDIAHALAYEGQVEYEAITPYDKVDGSMDEEDMAYIQVSLNVQGETPLPQKKEDSNTIYCSVQK
PKKTAQTPQQDAESPETPTYENFT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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