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Report for CCDS35778.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35778.1 Public Mus musculus 1 Cd244a 23 108 98 CCDS HistoryNCBI Gene:18106Re-query CCDS DB by CCDS ID:35778.1Re-query CCDS DB by GeneID:18106See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35778.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000004829.12 ENSMUSP00000004829.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000004829.12Link to Ensembl Protein Viewer:ENSMUSP00000004829.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000004829Re-query CCDS DB by Protein ID:ENSMUSP00000004829
Original member Current member NCBI NM_018729.2 NP_061199.2 Accepted alive Link to Nucleotide Sequence:NM_018729.2Link to Protein Sequence:NP_061199.2Re-query CCDS DB by Nucleotide ID:NM_018729Re-query CCDS DB by Protein ID:NP_061199Link to BLAST:NP_061199.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061199.2 397 Q07763-1 397 100% 0 0

Chromosomal Locations for CCDS 35778.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 171559325 171559385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171573681 171574004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171574093 171574368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171577243 171577347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171577815 171577969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171579099 171579170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171580758 171580820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171581643 171581699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171582804 171582884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1194 nt):
ATGTTGGGGCAAGCTGTCCTGTTCACAACCTTTCTGCTCCTCAGGGCTCATCAGGGCCAAGACTGCCCAG
ATTCTTCTGAAGAAGTGGTTGGTGTCTCAGGAAAGCCTGTCCAGCTGAGGCCTTCCAACATACAGACAAA
AGATGTTTCTGTTCAATGGAAGAAGACAGAACAGGGCTCACACAGAAAAATTGAGATCCTGAATTGGTAT
AATGATGGTCCCAGTTGGTCAAATGTATCTTTTAGTGATATCTATGGTTTTGATTATGGGGATTTTGCTC
TTAGTATCAAGTCAGCTAAGCTGCAAGACAGTGGTCACTACCTGCTGGAGATCACCAACACAGGCGGAAA
AGTGTGCAATAAGAACTTCCAGCTTCTTATACTTGATCATGTTGAGACCCCTAACCTGAAGGCCCAGTGG
AAGCCCTGGACTAATGGGACTTGTCAACTGTTTTTGTCCTGCTTGGTGACCAAGGATGACAATGTGAGCT
ACGCTTTGTACAGAGGGAGCACTCTGATCTCCAATCAAAGGAATAGTACCCACTGGGAGAACCAGATTGA
CGCCAGCAGCCTGCACACATACACCTGCAACGTTAGCAACAGAGCCAGCTGGGCAAACCACACCCTGAAC
TTCACCCATGGCTGTCAAAGTGTCCCTTCGAATTTCAGATTTCTGCCCTTTGGGGTGATCATCGTGATTC
TAGTTACATTATTTCTCGGGGCCATCATTTGTTTCTGTGTGTGGACTAAGAAGAGGAAGCAGTTACAGTT
CAGCCCTAAGGAACCTTTGACAATATATGAATATGTCAAGGACTCACGAGCCAGCAGGGATCAACAAGGA
TGCTCTAGGGCCTCTGGATCTCCCTCGGCTGTCCAGGAAGATGGGAGGGGACAAAGAGAATTGGACAGGC
GTGTTTCTGAGGTGCTGGAGCAGTTGCCACAGCAGACTTTCCCTGGAGATAGAGGCACCATGTACTCTAT
GATACAGTGCAAGCCTTCTGATTCCACATCACAAGAAAAATGTACAGTATATTCAGTAGTCCAGCCTTCC
AGGAAGTCTGGATCCAAGAAGAGGAACCAGAACTCTTCCTTAAGTTGTACCGTGTACGAGGAGGTTGGAA
ACCCATGGCTCAAAGCTCACAACCCTGCCAGGCTGAGCCGCAGAGAGCTGGAGAACTTTGATGTCTACTC
CTAG

Translation (397 aa):
MLGQAVLFTTFLLLRAHQGQDCPDSSEEVVGVSGKPVQLRPSNIQTKDVSVQWKKTEQGSHRKIEILNWY
NDGPSWSNVSFSDIYGFDYGDFALSIKSAKLQDSGHYLLEITNTGGKVCNKNFQLLILDHVETPNLKAQW
KPWTNGTCQLFLSCLVTKDDNVSYALYRGSTLISNQRNSTHWENQIDASSLHTYTCNVSNRASWANHTLN
FTHGCQSVPSNFRFLPFGVIIVILVTLFLGAIICFCVWTKKRKQLQFSPKEPLTIYEYVKDSRASRDQQG
CSRASGSPSAVQEDGRGQRELDRRVSEVLEQLPQQTFPGDRGTMYSMIQCKPSDSTSQEKCTVYSVVQPS
RKSGSKKRNQNSSLSCTVYEEVGNPWLKAHNPARLSRRELENFDVYS


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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