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Report for CCDS35767.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35767.1 Public Mus musculus 1 Sh2d1b1 23 108 98 CCDS HistoryNCBI Gene:26904Re-query CCDS DB by CCDS ID:35767.1Re-query CCDS DB by GeneID:26904See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35767.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000179976.2 ENSMUSP00000137069.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000179976.2Link to Ensembl Protein Viewer:ENSMUSP00000137069.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000179976Re-query CCDS DB by Protein ID:ENSMUSP00000137069
Original member Current member NCBI NM_012009.5 NP_036139.3 Accepted alive Link to Nucleotide Sequence:NM_012009.5Link to Protein Sequence:NP_036139.3Re-query CCDS DB by Nucleotide ID:NM_012009Re-query CCDS DB by Protein ID:NP_036139Link to BLAST:NP_036139.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_036139.3 132 O35324 132 98.4848% 0 2

Chromosomal Locations for CCDS 35767.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 170277376 170277509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 170279784 170279847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 170283135 170283297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 170284643 170284680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (399 nt):
ATGGATCTGCCTTACTACCATGGCTGCCTGACCAAGCGAGAGTGTGAAGCCCTGCTCCTCAAGGGAGGTG
TGGATGGCAACTTTCTGATAAGAGACAGCGAGTCTGTGCCAGGAGCCCTGTGCCTCTGTGTCTCGTTTAA
AAAGCTTGTCTACAGCTACCGAATCTTCAGAGAGAAACATGGATATTACAGGATAGAGACTAATGCTCAT
ACTCCAAGAACGATCTTTCCAAACCTACAGGAATTGGTCTCCAAATATGGAAAACCGGGTCAAGGATTGG
TGGTTCACCTTTCAAACCCAATAATGAGAAACAACCTATGCCAAAGAGGGAGAAGAATGGAGTTAGAGCT
GAATGTTTATGAGAACACTGATAAGGAGTATGTGGACGTCTTGCCTTGA

Translation (132 aa):
MDLPYYHGCLTKRECEALLLKGGVDGNFLIRDSESVPGALCLCVSFKKLVYSYRIFREKHGYYRIETNAH
TPRTIFPNLQELVSKYGKPGQGLVVHLSNPIMRNNLCQRGRRMELELNVYENTDKEYVDVLP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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