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Report for CCDS35684.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35684.1 Public Mus musculus 1 Serpinb5 23 108 98 CCDS HistoryNCBI Gene:20724Re-query CCDS DB by CCDS ID:35684.1Re-query CCDS DB by GeneID:20724See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35684.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000086701.12 ENSMUSP00000083908.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000086701.12Link to Ensembl Protein Viewer:ENSMUSP00000083908.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000086701Re-query CCDS DB by Protein ID:ENSMUSP00000083908
Original member Current member EBI ENSMUST00000112729.2 ENSMUSP00000108349.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112729.2Link to Ensembl Protein Viewer:ENSMUSP00000108349.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000112729Re-query CCDS DB by Protein ID:ENSMUSP00000108349
Original member Current member EBI ENSMUST00000112730.7 ENSMUSP00000108350.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112730.7Link to Ensembl Protein Viewer:ENSMUSP00000108350.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000112730Re-query CCDS DB by Protein ID:ENSMUSP00000108350
Original member Current member NCBI NM_001360853.1 NP_001347782.1 Accepted alive Link to Nucleotide Sequence:NM_001360853.1Link to Protein Sequence:NP_001347782.1Re-query CCDS DB by Nucleotide ID:NM_001360853Re-query CCDS DB by Protein ID:NP_001347782Link to BLAST:NP_001347782.1
Original member Current member NCBI NM_009257.4 NP_033283.1 Accepted alive Link to Nucleotide Sequence:NM_009257.4Link to Protein Sequence:NP_033283.1Re-query CCDS DB by Nucleotide ID:NM_009257Re-query CCDS DB by Protein ID:NP_033283Link to BLAST:NP_033283.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001347782.1 375 P70124 375 100% 0 0
NP_033283.1 375 P70124 375 100% 0 0

Chromosomal Locations for CCDS 35684.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 106870283 106870450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 106872250 106872387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 106875043 106875160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 106876010 106876152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 106880176 106880343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 106881601 106881993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1128 nt):
ATGGATGCCCTGAGACTGGCAAATTCAGCTTTTGCTGTTGACTTGTTCAAACAACTATGTGAAAGGGACC
CAGCAGGAAACATTCTCTTCTCTCCAATATGCCTCTCTACTTCTCTGTCCCTTGCGCAAGTGGGCACCAA
AGGCGACACAGCAAATGAAATTGGACAGGTCCTTCATTTTGAGAATGTCAAAGATGTACCCTTTGGGTTT
CAAACAGTCACTTCTGATGTTAATAAGCTCAGTTCTTTTTACTCTTTGAAACTTGTCAAGCGACTCTACA
TAGACAAATCTCTGAACCCTTCTACAGAATTTATCAGTTCTACCAAAAGACCATATGCAAAAGAATTGGA
AACTGTTGACTTCAAAGACAAACTGGAAGAAACGAAAGGTCAAATTAACAGCTCCATTAAGGAGCTCACA
GATGGCCACTTTGAGGACATTTTGTCAGAGAACAGTATAAGTGACCAGACCAAAATCCTTGTGGTTAATG
CTGCCTACTTTGTTGGAAAGTGGATGAAGAAATTTCCGGAATCAGAAACAAAAGAATGTCCTTTCAGAAT
CAGCAAGACAGACACCAAACCCGTACAAATGATGAATCTTGAGGCCACTTTCTGCTTGGGTAACATTGAT
GACATCAGCTGTAAGATCATAGAACTTCCTTTCCAGAATAAGCATCTGAGTATGCTCATTGTGCTCCCCA
AGGACGTGGAGGATGAGTCCACAGGCCTGGAGAAGATTGAACAGCAACTCAACCCAGAAACATTGTTACA
GTGGACCAACCCCAGTACCATGGCCAATGCCAAAGTCAAACTTTCCCTCCCAAAGTTTAAGGTAGAAAAG
ATGATTGATCCCAAGGCTAGTCTGGAAAGCCTAGGGCTGAAAAGTCTCTTCAATGAAAGTACATCGGATT
TCTCTGGAATGTCAGAGACCAAGGGAGTGTCCCTGTCAAATGTGATTCATAGAGTATGCCTAGAAATAAC
CGAAGATGGTGGTGAGTCCATCGAGGTGCCAGGGTCCCGGATCTTACAGCACAAGGATGAATTCAATGCT
GACCATCCATTTATTTATATCATTAGACACAACAAAACTCGAAACATCATTTTCTTTGGCAAATTCTGTT
CTCCTTAG

Translation (375 aa):
MDALRLANSAFAVDLFKQLCERDPAGNILFSPICLSTSLSLAQVGTKGDTANEIGQVLHFENVKDVPFGF
QTVTSDVNKLSSFYSLKLVKRLYIDKSLNPSTEFISSTKRPYAKELETVDFKDKLEETKGQINSSIKELT
DGHFEDILSENSISDQTKILVVNAAYFVGKWMKKFPESETKECPFRISKTDTKPVQMMNLEATFCLGNID
DISCKIIELPFQNKHLSMLIVLPKDVEDESTGLEKIEQQLNPETLLQWTNPSTMANAKVKLSLPKFKVEK
MIDPKASLESLGLKSLFNESTSDFSGMSETKGVSLSNVIHRVCLEITEDGGESIEVPGSRILQHKDEFNA
DHPFIYIIRHNKTRNIIFFGKFCSP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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