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Report for CCDS35616.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35616.1 Public Mus musculus 1 Plcd4 23 108 98 CCDS HistoryNCBI Gene:18802Re-query CCDS DB by CCDS ID:35616.1Re-query CCDS DB by GeneID:18802See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35616.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027362.13 ENSMUSP00000027362.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027362.13Link to Ensembl Protein Viewer:ENSMUSP00000027362.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000027362Re-query CCDS DB by Protein ID:ENSMUSP00000027362
Original member Current member NCBI NM_148937.2 NP_683739.2 Accepted alive Link to Nucleotide Sequence:NM_148937.2Link to Protein Sequence:NP_683739.2Re-query CCDS DB by Nucleotide ID:NM_148937Re-query CCDS DB by Protein ID:NP_683739Link to BLAST:NP_683739.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_683739.2 807 Q8K3R3-1 807 100% 0 0

Chromosomal Locations for CCDS 35616.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 74547947 74547968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74548105 74548263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74549175 74549403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74551020 74551149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74551988 74552219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74554490 74554691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74555943 74556087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74557720 74557872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74560290 74560493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74561842 74561937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74562055 74562223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74562714 74562830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74563451 74563623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74564377 74564512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74565032 74565181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74565260 74565366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2424 nt):
ATGACATCTCAGATTCAAGACCTACTAGCCACTGATCAGGACCTGCTGCTGATGCAAGAAGGCACAATGA
TGCGCAAGGTGAGGACCAAAAGCTGGAAGAAGCTAAGATACTTCAGACTTCAGAATGACGGCATGACAGT
CTGGCATGGAAGTCAACCAGAAAGCATGCCCAAGCCCACTTTTTCGATCTCTGATGTGGAGAGGATACGT
AAGGGGCAGGATTCTGAGTTGTTGCGCTATCTGGTGGAGGAGTTTCCCCTGGAGCAAGGGTTCACCGTTG
TCTTTCATGGGCGCCGCCCCAACCTGGACCTAGTGGCCAACAGTGTTGAAGAGGCCCAGATTTGGATGCG
AGGACTCCAGCTGTTGGTGGATCTTGTTGCCAGCATGGACCACCAGGAGCAAATGGATCAAATGTTGAAT
GAGTGGTTCCAGCAAGCAGACAGAAACCAGGATGGCCGGATGAGTTTCAGAGAAGCTCAACGGCTGCTGC
TTCTGATGAACGTGGAAATGGATGAAGAGTACGCCTTCAGTCTTTTCCAGGAGGCAGATGTTACCCAGTC
TGATGATCTGGGGTCGGAAGAATTTGTACAGTTCTATAAGGCCCTGACTAAGCGCACTGAGATTGAAGAA
ATATTTGAGGACTTCTCATCTGACAAACAGAAGCTGACCTTGCTGGAATTTGTGGATTTCCTTAGAAAGG
AACAGAAAGAAAAAGACCATGCTCCTGACCTCGCTCTGGAACTCATTGACCGCTATGAGCCTTCTGAGAA
TGGCCGATTGCTGCATGTGCTGAGCAAGGATGGCTTCCTCAAGTACCTCTGCTCGAAGGATGGAAACATC
TTCAACAGTGACTGCCTCCCTATCTACCAGGATATGACTCAGCCTCTGAGCCACTACTACATTAACTCTT
CTCACAACACCTACCTAGTGGGGGACCAGCTTTGCGGCCAGAGCAGCGTTGAAGGATACATACGGGCCTT
GAAACGGGGGTGCCGCTGTGTGGAGGTGGACACGTGGGATGGACCTGATGGAGAGCCTGTTGTTTATCAT
GGGCATACCCTGACCTCTCGCATCCTATTCAAAGATGTGTTGGCAACTCTCGCGCAATATGCCTTCCAGT
CATCAGACTACCCTCTCATCTTGTCTCTGGAAAACCACTGCACCTGGGAACAGCAGAGGACCATGGCACA
CCATCTGACCGAGATCCTGGGAGAGCAGCTGCTGAGGAACACCCTAGAGGGATTGCTGGTTGACAGCATG
CCCTCGCCAGAGCAGCTTCGGGGGAAGATCTTGGTGAAAGGAAAGAAGTTAAGAACAATTGAAGTTGACA
AGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGCTGGAGAAAGATGAGGGGCCAGATCTGGACCCAGCCTC
CCCTGAGTTGGACACTCAACCTCAGCCTGAGACCCAGGGGCAGGCCGCTGGGAACAAGAAGGAGAGGAAG
AAGAAGGTTATGAAGTGTCCGATGTCTTGTCTGCTTATCTGTGGTCATGTTATGGCCCAGGCTCCTAGTT
CCATTCCTGAGTCCATTCTCTTGTCAAAGCAGTTTCTTCTCCTGAGTTCCACAACCATCATGTGCCCAGA
CCTATCTGCCCTGGTTGTCTACTTGAGGACTGTCCCCTTCTGCAGCTTCACTCATTCCAAAGAAAACTAC
CACATCTATGACATTTCATCCTTTTCTGAGTCCAAGGCCAAGAACCTCATCAAGGAGGCAGGCAACGAGT
TTGTACAGCACAATGCCAGACAGTTATGCCGCGTGTATCCCAGTGGTCTGAGGACAGATTCATCCAACTT
TAACCCCCAGGAACACTGGAATGTAGGCTGCCAGATGGTGGCTATGAATATGCAGACTGCAGGAAGTGCA
ATGGATATCTGTGATGGGCTCTTCCGCCAGAATGGTGGCTCTGGCTATGTGCTGAAGCCAGAATTCCTGA
GAGATACCCAGAGTTCATTCAATCCTGAGAGGCCAATTAGTCTTTATAAGGCCCAGATCCTTGTAGTCCA
GGTGATCAGTGGCCAACAACTCCCCAAAGTGGATAAAACCAAAGAGACAACCGTTGTGGATCCACTGGTG
AAAGTAGAGCTCTATGGTGTTCCTGAAGACACAAAGGAGCAAGAGACCAGCCATGTGGAGAACAATGGTA
TTAATCCATACTGGGGGGAGACTTTCTATTTCCGGCTCCAGGTACCTGAACTTGCTATGTTGCGTTTTGT
GGTAAAGGATTATAGCAGGAAATCCCGAAATAACTTTATTGGCCAATACACCCTACCTTGGACCTGTATG
AAACAAGGCTACCGACATGTATCCTTGCTCTCCAGAGATGGCACTAGCCTCAATCCAGCTTCCATCTTTG
TATACACCTGCATGCAGGAAGACCTGGATATGGATGAGCCCTGA

Translation (807 aa):
MTSQIQDLLATDQDLLLMQEGTMMRKVRTKSWKKLRYFRLQNDGMTVWHGSQPESMPKPTFSISDVERIR
KGQDSELLRYLVEEFPLEQGFTVVFHGRRPNLDLVANSVEEAQIWMRGLQLLVDLVASMDHQEQMDQMLN
EWFQQADRNQDGRMSFREAQRLLLLMNVEMDEEYAFSLFQEADVTQSDDLGSEEFVQFYKALTKRTEIEE
IFEDFSSDKQKLTLLEFVDFLRKEQKEKDHAPDLALELIDRYEPSENGRLLHVLSKDGFLKYLCSKDGNI
FNSDCLPIYQDMTQPLSHYYINSSHNTYLVGDQLCGQSSVEGYIRALKRGCRCVEVDTWDGPDGEPVVYH
GHTLTSRILFKDVLATLAQYAFQSSDYPLILSLENHCTWEQQRTMAHHLTEILGEQLLRNTLEGLLVDSM
PSPEQLRGKILVKGKKLRTIEVDKEEEEEEEEEELEKDEGPDLDPASPELDTQPQPETQGQAAGNKKERK
KKVMKCPMSCLLICGHVMAQAPSSIPESILLSKQFLLLSSTTIMCPDLSALVVYLRTVPFCSFTHSKENY
HIYDISSFSESKAKNLIKEAGNEFVQHNARQLCRVYPSGLRTDSSNFNPQEHWNVGCQMVAMNMQTAGSA
MDICDGLFRQNGGSGYVLKPEFLRDTQSSFNPERPISLYKAQILVVQVISGQQLPKVDKTKETTVVDPLV
KVELYGVPEDTKEQETSHVENNGINPYWGETFYFRLQVPELAMLRFVVKDYSRKSRNNFIGQYTLPWTCM
KQGYRHVSLLSRDGTSLNPASIFVYTCMQEDLDMDEP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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