NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS30410.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30410.1 Public Mus musculus X Bhlhb9 23 108 98 CCDS HistoryNCBI Gene:70237Re-query CCDS DB by CCDS ID:30410.1Re-query CCDS DB by GeneID:70237See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30410.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000068755.13 ENSMUSP00000068067.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000068755.13Link to Ensembl Protein Viewer:ENSMUSP00000068067.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000068755Re-query CCDS DB by Protein ID:ENSMUSP00000068067
Original member Current member EBI ENSMUST00000180025.7 ENSMUSP00000137213.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000180025.7Link to Ensembl Protein Viewer:ENSMUSP00000137213.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000180025Re-query CCDS DB by Protein ID:ENSMUSP00000137213
Original member NCBI NM_001098222.1 NP_001091692.1 Updated not alive Link to Nucleotide Sequence:NM_001098222.1Link to Protein Sequence:NP_001091692.1Re-query CCDS DB by Nucleotide ID:NM_001098222Re-query CCDS DB by Protein ID:NP_001091692
Current member NCBI NM_001098222.2 NP_001091692.1 Accepted alive Link to Nucleotide Sequence:NM_001098222.2Link to Protein Sequence:NP_001091692.1Re-query CCDS DB by Nucleotide ID:NM_001098222Re-query CCDS DB by Protein ID:NP_001091692Link to BLAST:NP_001091692.1
Original member NCBI NM_198161.2 NP_937804.1 Updated not alive Link to Nucleotide Sequence:NM_198161.2Link to Protein Sequence:NP_937804.1Re-query CCDS DB by Nucleotide ID:NM_198161Re-query CCDS DB by Protein ID:NP_937804
Current member NCBI NM_198161.3 NP_937804.1 Accepted alive Link to Nucleotide Sequence:NM_198161.3Link to Protein Sequence:NP_937804.1Re-query CCDS DB by Nucleotide ID:NM_198161Re-query CCDS DB by Protein ID:NP_937804Link to BLAST:NP_937804.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001091692.1 539 Q6PB60 539 100% 0 0
NP_937804.1 539 Q6PB60 539 100% 0 0

Chromosomal Locations for CCDS 30410.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 135889041 135890660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1620 nt):
ATGACTGGTTCAAAGAATAAGGCTAGGGCACAGGCTAAACTAGAAAAAAGGGCAAGTGCACAAGCCAGAG
CTGTGGCAGAGAGGGAGGCTGCTAATGCCAACCGAGGTGCAGGCAAAAGCCGGGACAAAGGGAAAGGTAA
GGCAGGCTCTAAATCAGATGCAGTGGCAGAGGTGAAGGCAGGGTCTAAGGGAAAGGTAGTTGCTGAGACA
AAAGAAGGAGCGAGACCAGAATCTAAGGCTCTAGTAAAAGGCACCTCAGATTTCAACCATAGGACTGAGA
ACAAGTTTGCTAGATCCACACGTAAAGATAAGCCCAGTAGTGATAACTGGTTCTGGGCTGGAGAAGATTC
TGGTATTAATTCCTGGTTCTGGAAGGGAGAAGAGCTTAGTAATAATTCTGTTGCTAAGTGTGAAAATAAA
CCTAGTACTAGTATCCAGGCTCGTGCTGAGGAGCCCGCACCTAGGACCAGCCACAAGTCTAGGTCAGGTG
CTGAGGAGGAGGAGGAAGAGAACGTTATTGGGAACTGGTTTTGGGAAGGCGATGACACTGGTTTTGATAC
TGATCCTAAACCTGTGTTCAAAATAGTTAAACCTCAGCCAGTGGATGAAATTAATGAAAAAGATAGGCCA
AAGGACTGGTCCGAGGTAACTATATGGCCCAAAGCTCCTGCTGTAACTCCAGCAGTGTTAGGTTATAGAT
CCCAGGATTCATCTGAGGCAAGGTCCTCTTCATACATTGTTCTGGCCTCAAATGAAGAGGAAACTTCAAC
AGCCTGTACTAAGAATACTCGTTCAAGCCTACAGTCTATACCTGAGTATCCATTTGGTTCTGATCCTTGC
ATCCAGACCTTAGATGAAATTAGACAGCAAATCAAGATCAGAGAAGAGAATGGCATCAAGCCCTTCGCTT
GCCCTTGCAAACTGGAGTGCTATTTGGATTCTCCAGAATTTGAAAAGCTTGTTAACATACTTAAGTCAAC
TACTGATCCTCTTATTCATAAAATAGCACAGATTGCAATGGGTATACATAAGGTTCATCCATTTGCCCAG
GAATTCATTAATGAAGTGGGCGTGGTGACACTTATTGAAAGCTTGCTCAGTTTTTCTTCCCCTGAGGTTA
GTATTAAAAAGGCTGTGATTACTCTGAACTCTTCCGGGGATGACAGATACAACAAGGTAGAGTTTCATGT
TAAGCATATGTGTAAAGAAACTGTGTCCTTCCCCTTGAACTCACCTGGCCAGCAATCTGGATTAAAGATA
ATAGGGCAGCTGACTACCGAGTCTGTCCATCACTACATTGTAGTCAGCTACTTTTCAGAGCTTTTCCATT
TGCTGTCTCAGGGAAATCGTAAGACTAGGAATCTTGTTTTGAAAGTATTTTTGAATATGTCTGAAAATCC
CAAGGCAGCCAGAGATATGATAAATATGAAGGCGTTAGCAGCATTAAAACTCATCTTTAACCAAAAAGAG
GCAAAAGCCAATCTTGTTAGTGCTGTGGCCATCTTTATTAACATAAAGGAGCATATTAGAAAGGGTTCAA
TTGTAGTAGTCGATCACTTGAGTTACAATACTCTTACAGCCATATTCCGTGAAGTTAAGGGGATTATCGA
AAGAATGTAA

Translation (539 aa):
MTGSKNKARAQAKLEKRASAQARAVAEREAANANRGAGKSRDKGKGKAGSKSDAVAEVKAGSKGKVVAET
KEGARPESKALVKGTSDFNHRTENKFARSTRKDKPSSDNWFWAGEDSGINSWFWKGEELSNNSVAKCENK
PSTSIQARAEEPAPRTSHKSRSGAEEEEEENVIGNWFWEGDDTGFDTDPKPVFKIVKPQPVDEINEKDRP
KDWSEVTIWPKAPAVTPAVLGYRSQDSSEARSSSYIVLASNEEETSTACTKNTRSSLQSIPEYPFGSDPC
IQTLDEIRQQIKIREENGIKPFACPCKLECYLDSPEFEKLVNILKSTTDPLIHKIAQIAMGIHKVHPFAQ
EFINEVGVVTLIESLLSFSSPEVSIKKAVITLNSSGDDRYNKVEFHVKHMCKETVSFPLNSPGQQSGLKI
IGQLTTESVHHYIVVSYFSELFHLLSQGNRKTRNLVLKVFLNMSENPKAARDMINMKALAALKLIFNQKE
AKANLVSAVAIFINIKEHIRKGSIVVVDHLSYNTLTAIFREVKGIIERM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH