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Report for CCDS30401.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30401.1 Public Mus musculus X Armcx2 23 108 98 CCDS HistoryNCBI Gene:67416Re-query CCDS DB by CCDS ID:30401.1Re-query CCDS DB by GeneID:67416See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30401.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000035559.10 ENSMUSP00000049147.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000035559.10Link to Ensembl Protein Viewer:ENSMUSP00000049147.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000035559Re-query CCDS DB by Protein ID:ENSMUSP00000049147
Original member Current member EBI ENSMUST00000113193.8 ENSMUSP00000108818.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113193.8Link to Ensembl Protein Viewer:ENSMUSP00000108818.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000113193Re-query CCDS DB by Protein ID:ENSMUSP00000108818
Original member Current member EBI ENSMUST00000119010.7 ENSMUSP00000112507.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000119010.7Link to Ensembl Protein Viewer:ENSMUSP00000112507.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000119010Re-query CCDS DB by Protein ID:ENSMUSP00000112507
Original member Current member EBI ENSMUST00000168264.1 ENSMUSP00000127305.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000168264.1Link to Ensembl Protein Viewer:ENSMUSP00000127305.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000168264Re-query CCDS DB by Protein ID:ENSMUSP00000127305
Original member Current member NCBI NM_001166397.1 NP_001159869.1 Accepted alive Link to Nucleotide Sequence:NM_001166397.1Link to Protein Sequence:NP_001159869.1Re-query CCDS DB by Nucleotide ID:NM_001166397Re-query CCDS DB by Protein ID:NP_001159869Link to BLAST:NP_001159869.1
Original member Current member NCBI NM_001166398.1 NP_001159870.1 Accepted alive Link to Nucleotide Sequence:NM_001166398.1Link to Protein Sequence:NP_001159870.1Re-query CCDS DB by Nucleotide ID:NM_001166398Re-query CCDS DB by Protein ID:NP_001159870Link to BLAST:NP_001159870.1
Original member Current member NCBI NM_026139.4 NP_080415.3 Accepted alive Link to Nucleotide Sequence:NM_026139.4Link to Protein Sequence:NP_080415.3Re-query CCDS DB by Nucleotide ID:NM_026139Re-query CCDS DB by Protein ID:NP_080415Link to BLAST:NP_080415.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001159869.1 784 Q6A058 784 100% 0 0
NP_001159870.1 784 Q6A058 784 100% 0 0
NP_080415.3 784 Q6A058 784 100% 0 0

Chromosomal Locations for CCDS 30401.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 134804528 134806882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2355 nt):
ATGAGCCGAGCTCGGGATGCTGGCTGTGTAGCTGCTGGAATAGTGATTGGGGCGAGTGCCTGGTACTGTG
TCTACAAATATACTAGGGGAAAAGACCAGAAGAAGAAGAGGCTGACCAAGCCCAAGAACCGGGCCTCTGT
GGGTACTGGAAGCAGGGCTAGAGCGGGCCTCAGAGCTGGATTCACAATTGACCTTGGGCCAGGATTCAGT
CCCCCAAACCCCGTCGATATTGAGATAATGAACAAGGCCCAAGGAGAAGCCTCCAATCTTGCCACCACCG
TAGCTGAAGAAGTGGCACCAGCTGCACCCAGTCCTAAGGTTCAGAATGGGGCAGAAAGTAAGGTCCAGGA
GTTAAATGGGGCTAAAACTGAGGCTAATCTGGAATCAGTAGTCATGCCTTCAGCTACCTGTACAGTTACA
CCTCCTCCCAAGGTGGCAGGGGGTCTCACTGCTGCAGAGGCTCCAGAAATCATAGGAGCTCCCAAAGTGC
TGGAAGCTCCCAGCACCACAGAGGCTTCTGGGGCAGTAGCAGCCCCTGGACCAACAGTATCTCCAATGAT
AGCCCAGACTCCTGGGCCAGTGGTACCTTCGCCAACAATAGTGTCTACTGGGCCAGCAGCAATTCCCTGG
GCAGTGGCACATCCCGGGGCTGTCCAGTCTCCTGGGCCAGCAGTACCTCCCATGGCAGTCCAATCTCTTG
TGCCAGCAGCACCTTCCTGGGCAGTAGTAGCACCTCCTGGGGCAGTCTACATTCCTGTGGCAGCCCACTT
TGCTGGGCCAGCAGCAGCTTCCAGGGTAACCCAGTCTCCTGGGACGGTGATACCTCCCCTTCCACCCCCA
TCATCAGTACTTCCCAGGGGAGTCCCATCAGTACCTGGCAGAACAGTCCAGTCTCCTGGGGCAGCCGTGC
ATCCTGTGGCAGCCCAATCTACTGGGGTAGTAGTGCCTCCTAGGGCAGTACAGTATTCTGGGGCAGCAGT
GACTTCTGGAGGGGCAGCAGTACCTTCCGGAGGGGCAGCAACTCCTAGGGCAGCAGCATCTACCCAGAGG
ACAGCAAGCACAGAAGTCATGCAGGTCCCTAGGGTGGCAGCAGCTACTGAAGCCACAGAGACTCCTAGAA
TAGGAACACCTGCCATGGTAGCTGAGGCTTCTCTGCCCGTGCATTCTGGGGCTGCAGAGAATCCTGGGAC
TTCAGGGTCCTCTAAGACAGCAGCCACTGGCAAGAAAGCAGCCCCTGGAGCTCACACTGGGGCTATACCT
AAAGCTGGGTCAGCCACTGGAGCTGTACCCAAAGGTGGAGGAGGCAAGGGTGGAAACAAGAACCGGAGTG
GAGGCAAGGGCAAAAATAGGAAGAACAAGGTTGATGTGGATGAGTTGGGGATGGGTTTCCGTCCTGGTGA
TGGGGCTGCAGCTGCGGCGGCGGCTTCTGCTAATGGGGGGCAGGCCTTCCTAGCAGAGATTCCGGAATCT
GAGGAAGGGGAATCTGGGTGGACTGACACAGAGTCCGATTCTGACTCTGAGCCGGACGTCCCGCAGAGAG
GGAAGGGGAAGAGAACCATTCCCATGCATAAGCGCCCCTTTCCATATGAAATTGATGAGATCCTAGGTGT
TCGAGATCTCAGGAAAGTCCTAGCCTTGCTTCAGAAGTCAGATGATCCCTTCATTCAGCAAGTAGCCCTG
CTCACCCTGAGCAACAATGCCAATTATTCATGTAATCAAGAAACAATCCGAAAGTTGGGAGGCCTCCCAA
TTATTGCAAACATGATCAACAAAACTGACCCCCACATTAAGGAAAAAGCCTTAATGGCCATGAATAACCT
GAGTGAAAATTATGAAAACCAGGGCAGACTTCAGGTGTACATGAATAAAGTGATGGATGATATTATGGCT
TCTAACCTGAACTCAGCGGTACAGGTAGTTGGGCTAAAATTTTTAACAAACATGACTATTACTAATGACT
ACCAGCACCTGCTTGTCAATTCCATTGCCAACTTTTTCCGCTTGTTATCTCAGGGGGGTGGAAAAATCAA
GGTTGAGATTCTGAAAATACTTTCAAACTTTGCTGAAAATCCGGACATGCTAAAGAAACTTCTCGGTACC
CAGGTGCCGTCATCATTTAGTTCCCTTTATAATTCTTATGTGGAATCAGAAATTCTTATTAATGCCCTTA
CTCTATTTGAGATTATCTTCGACAACCTCAGAGCAGAAGTGTTCAACTACAGGGAATTCAACAAGGGGTC
CCTGTTTTACTTATGCACTACATCTGGGGTGTGTGTGAAGAAAATTCGAGCCTTAGCAAATCACCACGAC
CTCTTGGTGAAAGTGAAAGTTATAAAGCTGGTAAACAAATTCTGA

Translation (784 aa):
MSRARDAGCVAAGIVIGASAWYCVYKYTRGKDQKKKRLTKPKNRASVGTGSRARAGLRAGFTIDLGPGFS
PPNPVDIEIMNKAQGEASNLATTVAEEVAPAAPSPKVQNGAESKVQELNGAKTEANLESVVMPSATCTVT
PPPKVAGGLTAAEAPEIIGAPKVLEAPSTTEASGAVAAPGPTVSPMIAQTPGPVVPSPTIVSTGPAAIPW
AVAHPGAVQSPGPAVPPMAVQSLVPAAPSWAVVAPPGAVYIPVAAHFAGPAAASRVTQSPGTVIPPLPPP
SSVLPRGVPSVPGRTVQSPGAAVHPVAAQSTGVVVPPRAVQYSGAAVTSGGAAVPSGGAATPRAAASTQR
TASTEVMQVPRVAAATEATETPRIGTPAMVAEASLPVHSGAAENPGTSGSSKTAATGKKAAPGAHTGAIP
KAGSATGAVPKGGGGKGGNKNRSGGKGKNRKNKVDVDELGMGFRPGDGAAAAAAASANGGQAFLAEIPES
EEGESGWTDTESDSDSEPDVPQRGKGKRTIPMHKRPFPYEIDEILGVRDLRKVLALLQKSDDPFIQQVAL
LTLSNNANYSCNQETIRKLGGLPIIANMINKTDPHIKEKALMAMNNLSENYENQGRLQVYMNKVMDDIMA
SNLNSAVQVVGLKFLTNMTITNDYQHLLVNSIANFFRLLSQGGGKIKVEILKILSNFAENPDMLKKLLGT
QVPSSFSSLYNSYVESEILINALTLFEIIFDNLRAEVFNYREFNKGSLFYLCTTSGVCVKKIRALANHHD
LLVKVKVIKLVNKF


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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