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Report for CCDS30304.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30304.1 Public Mus musculus X Pdzd11 23 108 98 CCDS HistoryNCBI Gene:72621Re-query CCDS DB by CCDS ID:30304.1Re-query CCDS DB by GeneID:72621See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30304.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000015812.11 ENSMUSP00000015812.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000015812.11Link to Ensembl Protein Viewer:ENSMUSP00000015812.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000015812Re-query CCDS DB by Protein ID:ENSMUSP00000015812
Original member Current member EBI ENSMUST00000059099.6 ENSMUSP00000051068.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000059099.6Link to Ensembl Protein Viewer:ENSMUSP00000051068.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000059099Re-query CCDS DB by Protein ID:ENSMUSP00000051068
Original member Current member NCBI NM_001356384.1 NP_001343313.1 Accepted alive Link to Nucleotide Sequence:NM_001356384.1Link to Protein Sequence:NP_001343313.1Re-query CCDS DB by Nucleotide ID:NM_001356384Re-query CCDS DB by Protein ID:NP_001343313Link to BLAST:NP_001343313.1
Original member Current member NCBI NM_028303.4 NP_082579.1 Accepted alive Link to Nucleotide Sequence:NM_028303.4Link to Protein Sequence:NP_082579.1Re-query CCDS DB by Nucleotide ID:NM_028303Re-query CCDS DB by Protein ID:NP_082579Link to BLAST:NP_082579.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001343313.1 140 Q9CZG9 140 100% 0 0
NP_082579.1 140 Q9CZG9 140 100% 0 0

Chromosomal Locations for CCDS 30304.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 100623393 100623427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 100623583 100623643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 100623862 100623960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 100624533 100624589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 100624795 100624878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 100625288 100625374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (423 nt):
ATGGACAACCGGATTCCCTATGATGACTACCCTGTGGTTTTCCTGCCGGCCTATGAAAACCCTCCAGCGT
GGATTCCTCCTCATGAGAGAGTGTACCACCCAGACTACAACAATGAGTTGACCCAGTTTCTGCCCCGAAT
TGTTACACTGAAGAAGCCTCCTGGTGCTCAGTTGGGATTTAACATCCGAGGAGGAAAGGCCTCGCAGCTA
GGCATCTTCATCTCCAAGGTGATTCCAGACTCGGATGCACATCGAGCAGGACTTCAAGAAGGGGACCAAG
TTCTAGCTGTGAATGATGTGGATTTCCAAGATATTGAGCACAGCAAAGCTGTGGAAATCCTGAAGACAGC
CCGAGAAATCAGCATGCGTGTGCGCTTCTTTCCCTACAATTATCATCGCCAAAAGGAACGGACTGTGCAC
TAG

Translation (140 aa):
MDNRIPYDDYPVVFLPAYENPPAWIPPHERVYHPDYNNELTQFLPRIVTLKKPPGAQLGFNIRGGKASQL
GIFISKVIPDSDAHRAGLQEGDQVLAVNDVDFQDIEHSKAVEILKTAREISMRVRFFPYNYHRQKERTVH


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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