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Report for CCDS30216.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30216.1 Public Mus musculus X Avpr2 23 108 98 CCDS HistoryNCBI Gene:12000Re-query CCDS DB by CCDS ID:30216.1Re-query CCDS DB by GeneID:12000See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30216.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033765.7 ENSMUSP00000033765.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033765.7Link to Ensembl Protein Viewer:ENSMUSP00000033765.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000033765Re-query CCDS DB by Protein ID:ENSMUSP00000033765
Original member Current member NCBI NM_019404.2 NP_062277.1 Accepted alive Link to Nucleotide Sequence:NM_019404.2Link to Protein Sequence:NP_062277.1Re-query CCDS DB by Nucleotide ID:NM_019404Re-query CCDS DB by Protein ID:NP_062277Link to BLAST:NP_062277.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_062277.1 371 O88721 371 100% 0 0

Chromosomal Locations for CCDS 30216.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 73892244 73892268 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73892624 73893508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 73893669 73893874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1116 nt):
ATGATCCTGGTGTCTACCACGTCTGCAGTGCCTGGGGCCCTTTCGTCCCCTAGCTCTCCCAGCAACAGCA
GCCAGGAGGAGCTACTGGATGACCGAGACCCGCTGTTAGTCCGGGCTGAACTGGCCCTGCTATCTACAAT
TTTTGTGGCTGTGGCCTTGAGCAATGGCCTAGTGCTTGGGGCCCTAATACGACGGGGTCGGCGTGGACGC
TGGGCACCCATGCACGTCTTCATCAGTCATTTGTGCCTAGCTGACCTGGCTGTGGCTCTGTTTCAAGTGC
TGCCCCAGCTGGCTTGGGATGCCACCGACCGCTTCCATGGCCCTGATGCCTTGTGTCGGGCCGTCAAGTA
CCTGCAGATGGTGGGCATGTATGCCTCTTCCTACATGATCCTGGCCATGACACTAGACCGCCATCGCGCC
ATCTGCCGCCCTATGCTGGCATACCGCCATGGAGGTGGGGCTCGCTGGAACAGGCCAGTGCTGGTGGCCT
GGGCCTTCTCACTCCTTCTCAGCCTGCCTCAGCTCTTCATCTTTGCTCAACGTGATGTGGGAAATGGCAG
TGGGGTATTTGATTGCTGGGCCCGATTTGCAGAGCCATGGGGCCTTCGTGCCTATGTCACCTGGATCGCC
TTGATGGTGTTTGTGGCACCTGCCCTAGGCATTGCTGCCTGCCAGGTTCTTATCTTCCGGGAGATACATG
CCAGTCTGGTGCCAGGGCCATCTGAAAGGGCAGGGAGGCGCCGCAGAGGACACCGGACAGGAAGTCCCAG
CGAGGGAGCCCATGTATCAGCAGCCATGGCCAAGACCGTGAGGATGACACTGGTGATTGTGATTGTCTAC
GTGCTGTGCTGGGCACCCTTCTTCCTTGTGCAGCTGTGGGCAGCGTGGGATCCAGAAGCTCCTCTGGAAA
GACCCCCCTTTGTGTTGCTCATGCTGCTGGCTAGCCTTAACAGCTGTACCAACCCCTGGATCTATGCTTC
CTTCAGTAGCAGTGTCTCCTCGGAGTTGCGTAGCCTGCTTTGCTGTGCTCAGAGGCACACCACACACAGC
CTGGGTCCTCAAGATGAGTCCTGTGCCACAGCCAGCTCCTCTCTGATGAAGGATACACCCTCCTGA

Translation (371 aa):
MILVSTTSAVPGALSSPSSPSNSSQEELLDDRDPLLVRAELALLSTIFVAVALSNGLVLGALIRRGRRGR
WAPMHVFISHLCLADLAVALFQVLPQLAWDATDRFHGPDALCRAVKYLQMVGMYASSYMILAMTLDRHRA
ICRPMLAYRHGGGARWNRPVLVAWAFSLLLSLPQLFIFAQRDVGNGSGVFDCWARFAEPWGLRAYVTWIA
LMVFVAPALGIAACQVLIFREIHASLVPGPSERAGRRRRGHRTGSPSEGAHVSAAMAKTVRMTLVIVIVY
VLCWAPFFLVQLWAAWDPEAPLERPPFVLLMLLASLNSCTNPWIYASFSSSVSSELRSLLCCAQRHTTHS
LGPQDESCATASSSLMKDTPS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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