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Report for CCDS30143.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30143.1 Public Mus musculus X Zfp449 23 108 98 CCDS HistoryNCBI Gene:78619Re-query CCDS DB by CCDS ID:30143.1Re-query CCDS DB by GeneID:78619See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30143.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000101560.3 ENSMUSP00000099096.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000101560.3Link to Ensembl Protein Viewer:ENSMUSP00000099096.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000101560Re-query CCDS DB by Protein ID:ENSMUSP00000099096
Original member Current member NCBI NM_030139.5 NP_084415.1 Accepted alive Link to Nucleotide Sequence:NM_030139.5Link to Protein Sequence:NP_084415.1Re-query CCDS DB by Nucleotide ID:NM_030139Re-query CCDS DB by Protein ID:NP_084415Link to BLAST:NP_084415.1

Chromosomal Locations for CCDS 30143.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 56348375 56348728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 56353463 56353667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 56362467 56362580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 56362742 56363625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1557 nt):
ATGGCTGTGGCCCTGGGCTGTGCAATCCAGGCCTCCTTGAATCAGGGCTCTGTGCTGCAAGAGTATGACA
CAGACTGTGAAGTTTTCCGACAGCGTTTCAGGCAGTTCCAGTACACAGAAGCTGCCGGGCCTCATGAAGC
ATTCAACAAACTCTGGGAGCTTTGCTGTCAGTGGCTGAAGCCAAAGATGCGTTCTAAGGAACAAATCCTG
GAACTGCTTGTGCTAGAGCAATTCCTAACTATTCTGCCCACAGAAATAGAGACCTGGGTGAGGGAACACT
GCCCAGACAATAGAGAAAGAGTTGTGTCACTCATTGAAGACTTACAAAGAGAGCTTGAGATACCAGAACC
ACAGATTGACATGGATGACATGCTCTTGGAAGAACTGGCGCCAGTTGGAACAGTACCCATGCCACCCAAC
TTGCACCTGGAGGAGCCTTCACTCCAGGTGATGGAACCTGTTCAGGAGCCTCCGGTGCCGGATGCCTGGA
TTCCACAAGCTGGCCCCCAGGATCTGAACTACAGTGCTGATGCTGAATGCCAGTCCTTTCTGGACCCTGG
TTATCAGTTACCAAAGCTTGACATGAACTTCCCATTGGATCATAGAGAAGAACCATGGGTAAAAGACTTA
GAGGATCCCAAAGAAATGAAACAATTACTTGATTCCAAGATTGGTTTTGAGATGGGAATAGAAAATGAAG
AAGATACTTCAAAGGAAAAAAAACTGGAAACTTTGTACCCATTTGTTGTAACTTTAGAAGGGAATGCTCT
CCATGGTCCCATTTTGCAGAAAGACTATGTGCAGTTAGAAAACCAATGGGAAACATCCCCAGAGGACTTA
CAGACAGACCTAACAAAACTCGTAGATCCTCAGAACCCAACTCTAGGAGAGACACCCGAGAGCCCCAGCC
TGGAAGAACCTCTCACCCCGAAGCCTCCAAAGAAAAAGAGTCCTGGGGACAAACCTCACCGATGTCCCCA
GTGTGGCAAATGTTTCGCTCGGAAGTCACAACTTACAGGGCACCAGCGAATTCATTCAGGAGAAGAACCT
CACAAGTGCCCTGAATGCGGAAAAAGGTTCCTGCGTAGCTCTGACCTTTACAGACACCAACGACTTCACA
CAGGAGAAAGACCCTATGAATGCACTGTATGTAAAAAGCGATTCACTAGGCGCTCACACCTTCTTGGGCA
CCAGAGAACCCATTCTGAAGAAGAAACATATAAATGTCTTGAGTGTGGAAAAACCTTTTGTCATGGGTCA
AGTCTTAAAAGACATCTAAAAACTCATACAGGTGAAAAGCCTCATAGATGTCCTAATTGTGGGAAAAGTT
TTAGTCGCCTGACGGCACTTACTTTGCACCAGAGAACACACACGGAAGAGAGACCTTTTAAATGTAGTTA
CTGTGGGAAAAGCTTTAGACAGAGACCAAGCCTTGTCATTCATTTAAGAATCCATACAGGGGAAAAGCCA
TACAAGTGTACTCATTGTTCTAAAAGCTTCCGGCAGAGAGCAGGCCTTATTATGCACCAGGTCACACACT
TTAGAGGACTTCTTTAA

Translation (518 aa):
MAVALGCAIQASLNQGSVLQEYDTDCEVFRQRFRQFQYTEAAGPHEAFNKLWELCCQWLKPKMRSKEQIL
ELLVLEQFLTILPTEIETWVREHCPDNRERVVSLIEDLQRELEIPEPQIDMDDMLLEELAPVGTVPMPPN
LHLEEPSLQVMEPVQEPPVPDAWIPQAGPQDLNYSADAECQSFLDPGYQLPKLDMNFPLDHREEPWVKDL
EDPKEMKQLLDSKIGFEMGIENEEDTSKEKKLETLYPFVVTLEGNALHGPILQKDYVQLENQWETSPEDL
QTDLTKLVDPQNPTLGETPESPSLEEPLTPKPPKKKSPGDKPHRCPQCGKCFARKSQLTGHQRIHSGEEP
HKCPECGKRFLRSSDLYRHQRLHTGERPYECTVCKKRFTRRSHLLGHQRTHSEEETYKCLECGKTFCHGS
SLKRHLKTHTGEKPHRCPNCGKSFSRLTALTLHQRTHTEERPFKCSYCGKSFRQRPSLVIHLRIHTGEKP
YKCTHCSKSFRQRAGLIMHQVTHFRGLL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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