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Report for CCDS30090.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30090.1 Public Mus musculus X Atp1b4 23 108 98 CCDS HistoryNCBI Gene:67821Re-query CCDS DB by CCDS ID:30090.1Re-query CCDS DB by GeneID:67821See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30090.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000016471.8 ENSMUSP00000016471.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000016471.8Link to Ensembl Protein Viewer:ENSMUSP00000016471.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000016471Re-query CCDS DB by Protein ID:ENSMUSP00000016471
Original member Current member NCBI NM_133690.3 NP_598451.1 Accepted alive Link to Nucleotide Sequence:NM_133690.3Link to Protein Sequence:NP_598451.1Re-query CCDS DB by Nucleotide ID:NM_133690Re-query CCDS DB by Protein ID:NP_598451Link to BLAST:NP_598451.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598451.1 356 Q99ME6-1 356 100% 0 0

Chromosomal Locations for CCDS 30090.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 38316267 38316329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 38320511 38320772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 38324645 38324773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 38325011 38325115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 38329264 38329460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 38330554 38330610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 38332754 38332849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 38333561 38333722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1071 nt):
ATGAGACGGCAACTCCGCTCCAGAAGGGCTCCCGCCTTTCCTTACGGTTATCGCTACAGACTTGATGATC
AGGATGAAGCGAATCACAACTACTTAGCAGATGAAGAGGAGGAAGCTGAAGAGGAGGCTCAGGTGATGAT
GGTGCCTGGTCTAGAGGAAGAGGAAGAAGAGGAGGAAGGAAAAGAGGAGGAGGAAGAAAGGGAGGAAGAA
GAAGGTCAGGGTCAGTCAACAGGCAGTGCCTGGTGGCGGAAATTGCAGATCGTGAATGAATACCTGTGGG
ACCCGGAGAAAAGGATGTCTCTGGCCCGAACAGGTCAGAGTCGGAGTCTTATTTTAGTCATTTACTTCTT
CTTCTATGCCTCCCTGGCTGCCGTGATCACCCTGTTCATATACATGCTGTTCCTAGCCATCAGTCCTTAC
ATGCCGACCTTCACCGAGCAGGTGAAACCTCCTGGAGTTATGATCAGACCCTTCGCTCATAGCCTTAACT
TCAACTTCAACGTTTCTGAACCTGAAACTTGGCAGCGTTACGTGATTAGCCTAAATGGCTTTCTCCAGGG
CTATAATGACAGTCTTCAAGAGGAAATGAATATAGATTGTCCTCCGGGTCGGTACTTCATCCAAGATGGA
GATGAAGATGAGGACAAGAAGGCCTGCCAATTTAAGCGCTCCTTCCTGAAGAATTGCTCTGGGTTGGAGG
ATCCCACTTTTGGATACTCTACTGGACAGCCTTGCATCCTCCTCAAGATGAACCGGATTGTAGGCTTCCG
TCCTGAGTTTGGAGATCCTGTGAAGGTGTCCTGCAAAGTTCAGAAAGGTGATGAAAATGACATTCGATCC
ATCAATTACTACCCGGAGTCCGCTTCTTTTGACCTCCGCTACTACCCTTACTATGGCAAACTGACTCATG
TTAACTACACCTCCCCGCTGGTGGCAATGCATTTTACAGATGTGGTGAAGAACCAAGCAGTGCCTGTACA
GTGCCAGCTGAAGGGCAAAGGCATCGTAAATGATGTCATCAATGATCGTTTTGTTGGGAGGATAATCTTT
ACCCTGAACATAGAAACCTAG

Translation (356 aa):
MRRQLRSRRAPAFPYGYRYRLDDQDEANHNYLADEEEEAEEEAQVMMVPGLEEEEEEEEGKEEEEEREEE
EGQGQSTGSAWWRKLQIVNEYLWDPEKRMSLARTGQSRSLILVIYFFFYASLAAVITLFIYMLFLAISPY
MPTFTEQVKPPGVMIRPFAHSLNFNFNVSEPETWQRYVISLNGFLQGYNDSLQEEMNIDCPPGRYFIQDG
DEDEDKKACQFKRSFLKNCSGLEDPTFGYSTGQPCILLKMNRIVGFRPEFGDPVKVSCKVQKGDENDIRS
INYYPESASFDLRYYPYYGKLTHVNYTSPLVAMHFTDVVKNQAVPVQCQLKGKGIVNDVINDRFVGRIIF
TLNIET


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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