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Report for CCDS29998.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29998.1 Public Mus musculus X Ssxb2 23 108 98 CCDS HistoryNCBI Gene:387132Re-query CCDS DB by CCDS ID:29998.1Re-query CCDS DB by GeneID:387132See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29998.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023931.3 ENSMUSP00000023931.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023931.3Link to Ensembl Protein Viewer:ENSMUSP00000023931.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000023931Re-query CCDS DB by Protein ID:ENSMUSP00000023931
Original member Current member NCBI NM_001001450.4 NP_001001450.1 Accepted alive Link to Nucleotide Sequence:NM_001001450.4Link to Protein Sequence:NP_001001450.1Re-query CCDS DB by Nucleotide ID:NM_001001450Re-query CCDS DB by Protein ID:NP_001001450Link to BLAST:NP_001001450.1

Chromosomal Locations for CCDS 29998.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 8454930 8455042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 8458122 8458211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 8458510 8458624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 8459078 8459204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 8460856 8460908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (498 nt):
ATGATGCAGTGCACTGTACTACAAAATGGTGATCTAAATTCCTTAAAACGCAGGACATTTGGTTTTGTGC
TTGAAGAAGACAAGATTGTGTCTTTTCAAAATCACCCTGACATGGAAACAGTGAGTTCCTGTGAAAAGAA
CCCCATGGAAGTGCTTTATGAACCAAAGAATATCTGCAAGGCCTTCCAGGATATTTCTACATACTTCTCT
GATGAAGAGTGGGGAAAGCTGACTCAATGGCAGAAAAGTGCCTACGTGTACATGAAAAGAAACTACATCA
GAATGACTGACCTAGGGGTCACCGTGAACCAACCGGTTTTCATGCGTGGTAAGGAGCAGGACAAGCAATC
CCTGGTTGAAGGCATTGAAGTTCATGACAGTGATGAAACTAGTGGCATTCGGGTCAATGTTTGGAGCCAC
CGGCTGCGAGAGAGGAAGTATCGAGTGATATATGAAGAGATTAGTGATCCTGAAGAGGAAGAAGACGATG
ATTACTGA

Translation (165 aa):
MMQCTVLQNGDLNSLKRRTFGFVLEEDKIVSFQNHPDMETVSSCEKNPMEVLYEPKNICKAFQDISTYFS
DEEWGKLTQWQKSAYVYMKRNYIRMTDLGVTVNQPVFMRGKEQDKQSLVEGIEVHDSDETSGIRVNVWSH
RLRERKYRVIYEEISDPEEEEDDDY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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