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Report for CCDS29987.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29987.1 Public Mus musculus X Rbm3 23 108 98 CCDS HistoryNCBI Gene:19652Re-query CCDS DB by CCDS ID:29987.1Re-query CCDS DB by GeneID:19652See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29987.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000040010.9 ENSMUSP00000038964.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000040010.9Link to Ensembl Protein Viewer:ENSMUSP00000038964.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000040010Re-query CCDS DB by Protein ID:ENSMUSP00000038964
Original member Current member EBI ENSMUST00000115616.7 ENSMUSP00000111279.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115616.7Link to Ensembl Protein Viewer:ENSMUSP00000111279.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000115616Re-query CCDS DB by Protein ID:ENSMUSP00000111279
Original member Current member EBI ENSMUST00000115617.9 ENSMUSP00000111280.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115617.9Link to Ensembl Protein Viewer:ENSMUSP00000111280.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000115617Re-query CCDS DB by Protein ID:ENSMUSP00000111280
Original member Current member NCBI NM_001166409.2 NP_001159881.1 Accepted alive Link to Nucleotide Sequence:NM_001166409.2Link to Protein Sequence:NP_001159881.1Re-query CCDS DB by Nucleotide ID:NM_001166409Re-query CCDS DB by Protein ID:NP_001159881Link to BLAST:NP_001159881.1
Original member Current member NCBI NM_001293658.1 NP_001280587.1 Accepted alive Link to Nucleotide Sequence:NM_001293658.1Link to Protein Sequence:NP_001280587.1Re-query CCDS DB by Nucleotide ID:NM_001293658Re-query CCDS DB by Protein ID:NP_001280587Link to BLAST:NP_001280587.1
Original member Current member NCBI NM_016809.6 NP_058089.2 Accepted alive Link to Nucleotide Sequence:NM_016809.6Link to Protein Sequence:NP_058089.2Re-query CCDS DB by Nucleotide ID:NM_016809Re-query CCDS DB by Protein ID:NP_058089Link to BLAST:NP_058089.2

Chromosomal Locations for CCDS 29987.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 8143272 8143332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 8143658 8143751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 8143848 8143947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 8144573 8144679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 8144955 8145057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (465 nt):
ATGTCGTCTGAAGAAGGGAAACTCTTCGTAGGAGGGCTCAACTTCAACACCGATGAACAGGCACTTGAAG
ACCACTTCAGCAGCTTTGGGCCTATCTCTGAGGTGGTTGTTGTCAAGGACCGGGAGACTCAAAGATCCCG
GGGTTTTGGCTTCATCACCTTCACAAACCCAGAGCATGCCTCAGATGCGATGAGAGCTATGAATGGAGAG
TCCCTGGATGGGCGCCAAATCCGAGTTGATCATGCAGGAAAGTCTGCCAGGGGATCCAGAGGGGGTGCCT
TTGGTGGGCGTGGTCGCAGTTACTCTAGAGGTGGTGGAGACCAGGGATATGGAAGTGGAAGATATGACAG
TCGTCCTGGAGGATATGGATATGGGTATGGGCGGTCTAGAGACTACAGTGGCAGAAGCCAGGGTGGCTAT
GACCGCTACTCAGGAGGAAATTACAGAGACAATTATGACAACTGA

Translation (154 aa):
MSSEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGE
SLDGRQIRVDHAGKSARGSRGGAFGGRGRSYSRGGGDQGYGSGRYDSRPGGYGYGYGRSRDYSGRSQGGY
DRYSGGNYRDNYDN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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