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Report for CCDS29675.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29675.1 Public Mus musculus 19 Or9q1 23 108 98 CCDS HistoryNCBI Gene:258097Re-query CCDS DB by CCDS ID:29675.1Re-query CCDS DB by GeneID:258097See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 29675.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000067670.4 ENSMUSP00000067303.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000067670.4Link to Ensembl Protein Viewer:ENSMUSP00000067303.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000067670Re-query CCDS DB by Protein ID:ENSMUSP00000067303
Original member Current member EBI ENSMUST00000217079.1 ENSMUSP00000148910.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000217079.1Link to Ensembl Protein Viewer:ENSMUSP00000148910.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000217079Re-query CCDS DB by Protein ID:ENSMUSP00000148910
Original member Current member EBI ENSMUST00000216287.1 ENSMUSP00000149067.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000216287.1Link to Ensembl Protein Viewer:ENSMUSP00000149067.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000216287Re-query CCDS DB by Protein ID:ENSMUSP00000149067
Original member Current member EBI ENSMUST00000215760.1 ENSMUSP00000149543.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000215760.1Link to Ensembl Protein Viewer:ENSMUSP00000149543.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000215760Re-query CCDS DB by Protein ID:ENSMUSP00000149543
Original member Current member EBI ENSMUST00000214475.1 ENSMUSP00000151165.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000214475.1Link to Ensembl Protein Viewer:ENSMUSP00000151165.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000214475Re-query CCDS DB by Protein ID:ENSMUSP00000151165
Original member Current member EBI ENSMUST00000219674.1 ENSMUSP00000151471.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000219674.1Link to Ensembl Protein Viewer:ENSMUSP00000151471.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000219674Re-query CCDS DB by Protein ID:ENSMUSP00000151471
Original member Current member NCBI NM_001011831.1 NP_001011831.1 Accepted alive Link to Nucleotide Sequence:NM_001011831.1Link to Protein Sequence:NP_001011831.1Re-query CCDS DB by Nucleotide ID:NM_001011831Re-query CCDS DB by Protein ID:NP_001011831Link to BLAST:NP_001011831.1

Chromosomal Locations for CCDS 29675.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 13827459 13828394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (936 nt):
ATGGCTAAGGTGAATCTCACTTTGGTGACAGAGTTCCTCCTCATAGCATTCACTGAGCATCCTGAATGGG
GGCTCCCTCTTTTCCACCTGTTTTTATTTATCTATCTCTTCACTTTGCTAGGGAACTCAGGCATGATTGT
TTTGATCCGCATGGATCGCAGGCTCCACACCCCAATGTACTTCCTTCTAAGCCACCTCTCTTTCATGGAT
ATCTGTTACTCCTCTGTCACTGTTCCTCAGACAATGGCTGTGCTGTTGGAGCATGGGGCAGCTTTATCCT
ATGCACGCTGTGTTGCTCAGTTTTTCCTGTTTACTTTTTTTGGATCCATCGATTGCTACCTCTTGGCTCT
CATGGCCTACGACCGCTATGTGGCCGTGTGCCAGCCTTTGCTTTATGTCACCATAATGACACAGAAAGCC
CTTCTAAGTTTTGTGGCTGGGGCTTACATTGCTGGCCTCCTCAGTGCCTTGGTGAGGACAATCTCAGCAT
TCACCCTCTCTTTTTGTGGAAACAATGAGATCGACTTTATTTTTTGTGACCTTCCTCCTCTGTTAAAGCT
GACCTGTGGTGAGAGCTATATCCAGGAATTGGTGATTATTGTGTTTGCCATTTTTGTCATCCCTGCATGC
ATGGTGGTGATTGTGGTTTCCTACCTGTTCATCATTGTGGCCATTCTGAGGATCCCTTCAGCAGGAGGCC
GGGCCAAGACCTTCTCAACATGTGCCTCCCACCTCACTGCAGTGTCACTCTTCTTTGGCACTCTCATTTT
CATGTACCTGAGAGACAACTCTGGTCAGGCCTCAGAAAAGGATCGAGTTGTGTCTGTGTTCTACACAACA
GTAATCCCCATGTTGAATCCCCTCATCTACAGTTTGAGGAACAAGGAAGTGAAGGAAGCACTGAAAAATT
TTCTCAATAGAGTGAAGACTTTCTAA

Translation (311 aa):
MAKVNLTLVTEFLLIAFTEHPEWGLPLFHLFLFIYLFTLLGNSGMIVLIRMDRRLHTPMYFLLSHLSFMD
ICYSSVTVPQTMAVLLEHGAALSYARCVAQFFLFTFFGSIDCYLLALMAYDRYVAVCQPLLYVTIMTQKA
LLSFVAGAYIAGLLSALVRTISAFTLSFCGNNEIDFIFCDLPPLLKLTCGESYIQELVIIVFAIFVIPAC
MVVIVVSYLFIIVAILRIPSAGGRAKTFSTCASHLTAVSLFFGTLIFMYLRDNSGQASEKDRVVSVFYTT
VIPMLNPLIYSLRNKEVKEALKNFLNRVKTF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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