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Report for CCDS29646.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29646.1 Public Mus musculus 19 Or5b98 23 108 98 CCDS HistoryNCBI Gene:258368Re-query CCDS DB by CCDS ID:29646.1Re-query CCDS DB by GeneID:258368See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 29646.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000082006.1 ENSMUSP00000080666.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000082006.1Link to Ensembl Protein Viewer:ENSMUSP00000080666.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000082006Re-query CCDS DB by Protein ID:ENSMUSP00000080666
Original member Current member EBI ENSMUST00000213587.1 ENSMUSP00000149761.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000213587.1Link to Ensembl Protein Viewer:ENSMUSP00000149761.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000213587Re-query CCDS DB by Protein ID:ENSMUSP00000149761
Original member Current member EBI ENSMUST00000213925.1 ENSMUSP00000150243.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000213925.1Link to Ensembl Protein Viewer:ENSMUSP00000150243.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000213925Re-query CCDS DB by Protein ID:ENSMUSP00000150243
Original member Current member NCBI NM_146371.1 NP_666483.1 Accepted alive Link to Nucleotide Sequence:NM_146371.1Link to Protein Sequence:NP_666483.1Re-query CCDS DB by Nucleotide ID:NM_146371Re-query CCDS DB by Protein ID:NP_666483Link to BLAST:NP_666483.1

Chromosomal Locations for CCDS 29646.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 12953591 12954568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (978 nt):
ATGTATGTGGCCAACAGCAGTAGAATGAATGCATTCATACTCTTGGGACTAACTGACAACCCAGACCTGG
AAGCCCCCCTGTTCATCATATTCAATCTCATCTATCTCATCACACTGATTGGAAACCTGGGCATGATTGT
GTTGATCTGGTTCGACTCCCATCTCCATACCCCCATGTATATTTTCCTCAGTCACCTCTCCTTGGCAGAC
TGTGTTTATTCCTCTGCTGTGACTCCAAAAGTGATGGTTGGGCTTCTCACAGGGGATAAAGTTATCTCCT
ATGGAGGATGTGTTGCTCAAATGTTCTTCTTTGTGACTTTTGCCAGTGTTGACTGTTTCCTACTTGCTGT
TATGGCTTTTGACAGGCATGCTGCAGTGTGCAAGCCCTTACATTATACCACAAATATGACTACCAGTGTG
TGTGCTTGCATGGTGATTGCCTGTTATGTGTTCAGTTTAGCTGAATCTTCTGTCTATACTGGGTTTATCT
TTGATCTCTCCTTCTGCCATTCTAATGTGATTCATCACTTTTTTTGTGATATACCTCCAATCCTAAATCT
TTCCTGCTCTGATATATATACAAATGAGATTGTACTCTTTATCATAACATCCTTCAATGTCTTTTTTTCT
CTGATAGTTATCTTGACCTCCTATGCATTTATATTCATCGCTATCCTGAGGATGCATTCAGCAGAAGGAC
GGAAGAAGGCCTCCTCTACTTGTGCATCCCACCTTACTGCTGTAACTATATTCTATGGAACTATAATCTT
CATGTACTTACAGCCCAGTTCTAGTCATTCCATGGACAATGACCAAATGGCATCTGTTTTCTATACCACA
GTAGTTCCCATGTTAAACCCAGTTGTTTATAGCTTAAGGAATAAAGAAGTTCATAGTGCCTTCAAGAAAG
CCATTGAGAAGTTGAAGTCTGCTCAACACCAAGTTCTAATTAGAGATTTATACAGTTTATGTAATTAA

Translation (325 aa):
MYVANSSRMNAFILLGLTDNPDLEAPLFIIFNLIYLITLIGNLGMIVLIWFDSHLHTPMYIFLSHLSLAD
CVYSSAVTPKVMVGLLTGDKVISYGGCVAQMFFFVTFASVDCFLLAVMAFDRHAAVCKPLHYTTNMTTSV
CACMVIACYVFSLAESSVYTGFIFDLSFCHSNVIHHFFCDIPPILNLSCSDIYTNEIVLFIITSFNVFFS
LIVILTSYAFIFIAILRMHSAEGRKKASSTCASHLTAVTIFYGTIIFMYLQPSSSHSMDNDQMASVFYTT
VVPMLNPVVYSLRNKEVHSAFKKAIEKLKSAQHQVLIRDLYSLCN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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