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Report for CCDS29317.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29317.1 Public Mus musculus 18 Gnal 23 108 98 CCDS HistoryNCBI Gene:14680Re-query CCDS DB by CCDS ID:29317.1Re-query CCDS DB by GeneID:14680See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29317.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025402.14 ENSMUSP00000025402.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025402.14Link to Ensembl Protein Viewer:ENSMUSP00000025402.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000025402Re-query CCDS DB by Protein ID:ENSMUSP00000025402
Original member Current member NCBI NM_177137.5 NP_796111.2 Accepted alive Link to Nucleotide Sequence:NM_177137.5Link to Protein Sequence:NP_796111.2Re-query CCDS DB by Nucleotide ID:NM_177137Re-query CCDS DB by Protein ID:NP_796111Link to BLAST:NP_796111.2

Chromosomal Locations for CCDS 29317.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 67088528 67088873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 67134213 67134285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 67135312 67135366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 67135519 67135638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 67191370 67191467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 67211048 67211102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 67212225 67212298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 67213072 67213130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 67213488 67213608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 67217070 67217200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 67218504 67218571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 67222569 67222715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1347 nt):
ATGGGCCTATGCTACAGCCTGCGGCCGCTGCTCTTCGGGAGCCCAGAGGACACCCCGTGTGCGGCCTCGG
AACCCTGCGCAGAGGATGCTCAGCCCAGCGCCGCCCCGGCCCCTGCCTCGATCCCAGCCCCGGCTCCCGT
AGGGACCCTGCTCCGGCGTGGCGGCGGCCGGATCGTCGCGAACGCGCGGCCGCCAGGCGAGCTGCAGAGC
CGCCGGCGACAGGAGCAGCTACGAGCCGAGGAGCGCGAGGCGGCTAAAGAGGCGAGGAAAGTCAGCCGGG
GCATCGACCGCATGCTGCGCGAGCAGAAGCGGGACCTGCAGCAGACGCACCGGCTCCTGCTGCTGGGGGC
TGGTGAGTCCGGGAAAAGCACTATCGTCAAACAGATGAGGATCCTGCACGTCAATGGCTTCAACCCCGAG
GAAAAGAAGCAGAAAATTCTGGACATCAGGAAAAATGTCAAAGATGCGATCGTGACAATCGTTTCAGCAA
TGAGTACTATCATACCTCCAGTTCCACTGGCCAACCCTGAGAACCAGTTCCGGTCAGATTATATCAAGAG
CATAGCCCCTATCACTGACTTTGAATATTCCCAGGAGTTCTTTGACCATGTGAAGAAGCTGTGGGACGAT
GAAGGAGTGAAGGCCTGCTTTGAGAGATCCAACGAGTACCAGCTGATCGACTGTGCACAATACTTCCTGG
AAAGGATTGACAGTGTCAGTCTGGTTGACTACACACCCACAGACCAGGACCTGCTCAGATGCAGAGTGCT
GACATCAGGAATCTTTGAGACACGATTCCAAGTGGACAAAGTGAACTTTCACATGTTTGATGTTGGAGGC
CAGAGAGATGAGAGAAGAAAATGGATCCAGTGTTTTAATGATGTCACTGCGATCATTTACGTGGCGGCCT
GTAGTAGCTACAACATGGTGATCCGGGAAGATAACAATACCAACAGACTTCGGGAATCACTGGACCTGTT
TGAAAGCATCTGGAATAACAGGTGGTTGCGAACCATTTCTATCATCCTATTCTTGAACAAACAAGACATG
CTGGCAGAAAAAGTCTTGGCAGGGAAGTCAAAAATCGAAGACTATTTCCCGGAGTATGCCAATTATACTG
TCCCTGAAGATGCAACACCAGATGCGGGAGAAGATCCCAAAGTTACAAGAGCAAAGTTCTTTATCCGGGA
TCTGTTCTTGAGGATCAGCACAGCCACGGGTGATGGCAAACATTACTGCTACCCTCACTTCACCTGCGCC
GTGGACACAGAGAACATCCGCAGAGTGTTCAACGATTGCCGTGACATCATCCAGAGAATGCATCTCAAGC
AGTACGAACTCTTGTGA

Translation (448 aa):
MGLCYSLRPLLFGSPEDTPCAASEPCAEDAQPSAAPAPASIPAPAPVGTLLRRGGGRIVANARPPGELQS
RRRQEQLRAEEREAAKEARKVSRGIDRMLREQKRDLQQTHRLLLLGAGESGKSTIVKQMRILHVNGFNPE
EKKQKILDIRKNVKDAIVTIVSAMSTIIPPVPLANPENQFRSDYIKSIAPITDFEYSQEFFDHVKKLWDD
EGVKACFERSNEYQLIDCAQYFLERIDSVSLVDYTPTDQDLLRCRVLTSGIFETRFQVDKVNFHMFDVGG
QRDERRKWIQCFNDVTAIIYVAACSSYNMVIREDNNTNRLRESLDLFESIWNNRWLRTISIILFLNKQDM
LAEKVLAGKSKIEDYFPEYANYTVPEDATPDAGEDPKVTRAKFFIRDLFLRISTATGDGKHYCYPHFTCA
VDTENIRRVFNDCRDIIQRMHLKQYELL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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