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Report for CCDS29166.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29166.1 Public Mus musculus 18 Pcdha12 23 108 98 CCDS HistoryNCBI Gene:192164Re-query CCDS DB by CCDS ID:29166.1Re-query CCDS DB by GeneID:192164See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29166.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000047614.3 ENSMUSP00000047609.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000047614.3Link to Ensembl Protein Viewer:ENSMUSP00000047609.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000047614Re-query CCDS DB by Protein ID:ENSMUSP00000047609
Original member Current member NCBI NM_138663.2 NP_619604.1 Accepted alive Link to Nucleotide Sequence:NM_138663.2Link to Protein Sequence:NP_619604.1Re-query CCDS DB by Nucleotide ID:NM_138663Re-query CCDS DB by Protein ID:NP_619604Link to BLAST:NP_619604.1

Chromosomal Locations for CCDS 29166.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 37020230 37022623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 37156155 37156213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 37159265 37159353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 37184946 37185256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2853 nt):
ATGCTATTATTCTCGCAAAGCGGCCCAGGATCCCGGTGCCTCCTGCTCTCGTTCCTGCTCCTCACAACCT
GGGAGGCAGGGAGCGGCCAGCTCCACTACTCCATCCCAGAGGAGGCCAAACACGGCACCTTCGTGGGCCG
CATCGCGCAGGACCTGGGGCTGGAGCTGACGGAGCTGGTGCCCCGCTTGTTCAGGGTGGCGTCCAAGGAC
CGCGGAGACCTTCTGGAGGTAAATCTGCAGAATGGCATTTTGTTTGTGAATTCTCGGATCGACCGGGAGG
AGCTGTGCGGGCGGAGCTTGGAGTGTAGCATCCACCTGGAGGTGATCGTGGACAGGCCGCTGCAGGTTTT
CCACGTGGAGGTGGAGGTGAGGGACATTAATGACAATCCACCTGTGTTCCCTGAAACCAACAAAAACATC
GTGATTGCCGAGTCGAGACCTCCAGAAACTAGATTTCCACTAGATGGCGCATCCGATGCAGATATCGGAG
TCAATTCCGCCTTGACCTACCGATTGGATCCCAGCGATTATTTCGCTTTGGACACGCAAAACAATCGTGA
GCGAACTTCTTCGTTATCCCTTGTGTTAAAGAAATCATTAGACAGAGAAGAAATTCAGGAGTATAGTTTA
TTACTAACAGCTAGTGACGGAGGCAAACCGGAACTGACTGGCACAGTTCAGCTGCTGATCACCATCCTCG
ATGTGAATGACAATGCTCCGGAGTTTGATCGGTTCGTTTACAAAGTTAAAGTGTTAGAGGATGCACTTAA
TGGAACGTTGGTGATTAACTTAAACGCCACAGATCCTGACGAGGGTATAAATGGAGATATAATCTACTCC
TTCAGACGGCCTGTATCCCCTGCGGTGGTGCATGCATTTAATATAGATTCCAACAGTGGAGAAGTTAGGA
CAAAGGGGCTACTGGATTTCGAAGAAATTAAACTATATGAGATACCCGTGGAGGCAGTAGACAAAGGCAA
TATTCCAATGACAGGCCATTGTACCCTTCTGGTGGAATTACTGGATGTAAATGATAATGCACCAGAGGTC
ACGATTACTTCCCTGTCACTCCCAGTCAGAGAAGATGCTCAGCCAAGCACTGTCATAGCTCTCGTCAGCG
TGTCTGACCGAGACTCTGGTGACAACGGGCAGGTGACTTGCTCTTTGACGCCTCACCTCCCCTTCAAGCT
GGTGTCCACTTTCAAGAATTACTATTCGTTAGTGTTGGACAGCGCCCTGGACCGCGAAACCACCGCTGAC
TATAAGGTGGTGGTGACAGCCCGAGACAGGGGCTCACCCTCGCTGTGGTCCACGGCCAGCGTGTCCGTGG
AGGTGGCTGATGTGAACGACAATGCTCCTGCATTCGCGCAGCCCGAATACACGGTGTTTGTGAAGGAGAA
CAACCCGCCTGGTGCGCACATCTTCACGGTGTCAGCGATGGATGCGGATGCGCAGGAGAACGCGCTGGTG
TCCTACTCGCTGGTGGAGCGGAGGGTGGGCGAGCGCTTGCTGTCGAGCTATGTGTCTGTGCACGCGGAGA
GTGGCAAGGTGTTCGCGCTGCAGCCTCTGGACCATGAGGAGCTGGAGCTGCTGCAGTTCCAGGTGAGCGC
GCGGGATGCTGGTGTGCCTTCCCTGGGCAGTAATGTGACTCTGCAGGTGTTTGTGCTGGATGAGAATGAC
AATGCGCCCACGCTATTGCCTCACAGAGCCGTTGGAGCTGTCGGGACAGTGAGCGAACTTGTGCCTAGGT
CAGTGGGTTCAGGGCATGTAGTGGCGAAGGTGCGGGCAGTAGATGCGGACTCTGGTTACAATGCGTGGCT
GTCTTATGAGCTTCAGTTGGCAGCAGGGGGCATGCGCAGTCCCTTCCGCGTGGGTCTGTACACGGGCGAG
ATCAGCACGACGCGCTCCCTAGACGAAGCAGATGCGCCACGCCAGCGTCTGTTGGTGTTGGTGAAGGACC
ACGGCGAGCCCGCACTGACCGCCACAGCCACGGTGCTGGTGTCTCTGGTGGAGAATGGCCAAGCACCCAA
GATATCTTCCCTTGCTTCGGAGAGCACAGCATCTTCGGAGGCGTCGCTGGTGACTGTCAACGTGTACCTG
ATCATTGCTATTTGCGCAGTGTCCAGCCTGTTAGTGATCACGCTGCTGCTTTACACTGCGCTGCGCTGCT
CAGCAAGGTCCACAGATGGAGCCTGTGCTCCGGGGAAGCCCATGCTGGTGTGCTCCAGCGCGGTGGGGAG
CTGGTCATACTCGCAGCAGAGGAGACAGAGGGTGTGTTCTGGAGAGGGTCCACCTAAGACCGACCTCATG
GCCTTTAGTCCTAGTCTCCCTCCTGTGTTAGGCTCTGCAGAGGACACATGTCAGAGAGAAAGGCAGGTAG
AACATTTGAAAGAGCCCCGGCAGCCCAACCCTGACTGGCGCTACTCTGCCTCGCTAAGAGCAGGCATGCA
CAGCTCTGTGCACCTGGAGGAGGCTGGCATTCTACGGGCTGGTCCAGGAGGGCCTGATCAGCAGTGGCCA
ACAGTATCCAGTGCAACACCAGAACCTGAGGCAGGAGAGGTGTCCCCTCCGGTGGGCGCCGGTGTCAACA
GCAACAGCTGGACCTTTAAATACGGACCAGGCAACCCCAAACAGTCCGGTCCCGGTGAGTTGCCAGACAA
ATTCATTATCCCAGGATCTCCTGCAATCATCTCCATCCGGCAGGAGCCTGCTAACAACCAAATTGACAAA
AGCGATTTTATAACCTTCGGCAAAAAGGAGGAGACCAAGAAAAAGAAGAAAAAGAAGAAGGGTAACAAGA
CCCAGGAGAAAAAAGAGAAAGGGAACAGCACGACGGACAACAGTGACCAGTGA

Translation (950 aa):
MLLFSQSGPGSRCLLLSFLLLTTWEAGSGQLHYSIPEEAKHGTFVGRIAQDLGLELTELVPRLFRVASKD
RGDLLEVNLQNGILFVNSRIDREELCGRSLECSIHLEVIVDRPLQVFHVEVEVRDINDNPPVFPETNKNI
VIAESRPPETRFPLDGASDADIGVNSALTYRLDPSDYFALDTQNNRERTSSLSLVLKKSLDREEIQEYSL
LLTASDGGKPELTGTVQLLITILDVNDNAPEFDRFVYKVKVLEDALNGTLVINLNATDPDEGINGDIIYS
FRRPVSPAVVHAFNIDSNSGEVRTKGLLDFEEIKLYEIPVEAVDKGNIPMTGHCTLLVELLDVNDNAPEV
TITSLSLPVREDAQPSTVIALVSVSDRDSGDNGQVTCSLTPHLPFKLVSTFKNYYSLVLDSALDRETTAD
YKVVVTARDRGSPSLWSTASVSVEVADVNDNAPAFAQPEYTVFVKENNPPGAHIFTVSAMDADAQENALV
SYSLVERRVGERLLSSYVSVHAESGKVFALQPLDHEELELLQFQVSARDAGVPSLGSNVTLQVFVLDEND
NAPTLLPHRAVGAVGTVSELVPRSVGSGHVVAKVRAVDADSGYNAWLSYELQLAAGGMRSPFRVGLYTGE
ISTTRSLDEADAPRQRLLVLVKDHGEPALTATATVLVSLVENGQAPKISSLASESTASSEASLVTVNVYL
IIAICAVSSLLVITLLLYTALRCSARSTDGACAPGKPMLVCSSAVGSWSYSQQRRQRVCSGEGPPKTDLM
AFSPSLPPVLGSAEDTCQRERQVEHLKEPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWP
TVSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIRQEPANNQIDK
SDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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