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Report for CCDS29062.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29062.1 Public Mus musculus 18 Riok3 23 108 98 CCDS HistoryNCBI Gene:66878Re-query CCDS DB by CCDS ID:29062.1Re-query CCDS DB by GeneID:66878See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 29062.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025270.7 ENSMUSP00000025270.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025270.7Link to Ensembl Protein Viewer:ENSMUSP00000025270.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000025270Re-query CCDS DB by Protein ID:ENSMUSP00000025270
Original member Current member NCBI NM_024182.4 NP_077144.2 Accepted alive Link to Nucleotide Sequence:NM_024182.4Link to Protein Sequence:NP_077144.2Re-query CCDS DB by Nucleotide ID:NM_024182Re-query CCDS DB by Protein ID:NP_077144Link to BLAST:NP_077144.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_077144.2 519 Q9DBU3 519 100% 0 0

Chromosomal Locations for CCDS 29062.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 12128911 12128973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12135852 12135967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12136693 12136838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12136928 12137035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12137240 12137349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12139317 12139460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12142936 12143063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12148791 12148988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12149519 12149678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12152799 12152879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12152971 12153060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12153913 12154020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12155220 12155327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1560 nt):
ATGGATCTGGTCGGAGTGTCTTCGCCTGAGCCAGGGCCCGCAGCAGCTTGGGGACCCAGTAAGTGCCCAT
GGGCTACCCCTCAAAACACAGTATCCTGTTCACTGACCGAGGTGATGAGTGAGGAGCTGGCTAAAGAGCT
GCAGTTGGAAGAAGAAGCGGCTGCTTTCCCTGAAGTTGTTGTTGCTGAAGGACCATTCATTTCTGGAGAA
AACATTGACACTTCCAGTGACCTAATGCTGGCTCAGATGCTACAGATGGAATTTGACAGAGAATATGATG
CACAGCTTAGGCGTGAGGAAAAGAAGTTCAATGGTGATAGCAAAGTTTCCATTTCGTTTGAAAACTATCG
CAAAGTTCATCCTTTTGAAGACAGTGACAGCTCTGAAGACGAGGTTGACTGGCAGGACACTCGAGACGAT
CCCTACAGACCAGCAAAGCCAATTCCTACTCCCAAAAAGGGTTTTATTGGAAAAGGAAAAGACATCACCA
CCAAGCATGATGAAGTAGTATGTGGAAGGAAGAACACAGCAAGAATGGAAAATTTTGCCCCTGGCTTTCA
GGTAGGGGATGGAATTGGAATGGATTTGAAACTATCCAACCACGTTTTTAATGCCTTAAAACAACACGCC
TACTCAGAAGAGCGTCGGAGTGCCCGTCTACACGAGAAGAAGGAACATTCTACCGCTGAAAAAGCAGTTG
ATCCTAAGACACGCTTACTTATGTATAAAATGGTCAACTCTGGAATGTTGGAGACAATCACTGGCTGTAT
TAGTACAGGAAAGGAATCTGTTGTCTTTCATGCATATGGAGGGAGCCTGGAGGATGAAAAGGAAGATGGT
AAAGCTATACCAACAGAATGTGCCATCAAGGTATTTAAAACAACCCTTAATGAGTTTAAGAATCGTGACA
AGTACATTAAAGATGATTTCAGGTTTAAAGATCGCTTCAGTAAACTAAATCCACGTAAGATCATCCGCAT
GTGGGCAGAGAAAGAAATGCACAATCTTACAAGAATGCAGAAGGCTGGAATTCCTTGTCCAACAGTTGTA
CTGCTTAAGAAGCACATTTTAGTTATGTCTTTCATTGGCCATGATCAAGTTCCAGCCCCTAAATTAAAAG
AAGTAAAGCTTAGTAATGAAGAAATGAAAGATGCCTACTATCAGACTCTTCATTTGATGCAGCAATTATA
TAACGAATGTACCCTTGTGCATGCTGACCTCAGCGAGTATAACATGTTGTGGCATGCTGGGAAGGTCTGG
TTGATTGACGTCAGTCAGTCGGTAGAGCCAACCCATCCTCATGGCCTGGAGTTCTTATTCCGTGACTGTA
GGAATGTTTCACAGTTCTTCCAGAAAGGAGGAGTAACGGAAGCCCTCAATGAACGGGAGCTGTTCAATGC
TGTTTCTGGCCTGAACATCTCGGCAGACAATGAAGCTGATTTCTTAGCTGAGATAGAAGCTTTGGAGAAG
ATGAATGAAGATCACATTCAGAAGAACGGGAGGAAAGCAGCCTCGTTTCTGAAAGATGATGGAAGCCCAC
CTGTGCTGTCTGCCGACTAG

Translation (519 aa):
MDLVGVSSPEPGPAAAWGPSKCPWATPQNTVSCSLTEVMSEELAKELQLEEEAAAFPEVVVAEGPFISGE
NIDTSSDLMLAQMLQMEFDREYDAQLRREEKKFNGDSKVSISFENYRKVHPFEDSDSSEDEVDWQDTRDD
PYRPAKPIPTPKKGFIGKGKDITTKHDEVVCGRKNTARMENFAPGFQVGDGIGMDLKLSNHVFNALKQHA
YSEERRSARLHEKKEHSTAEKAVDPKTRLLMYKMVNSGMLETITGCISTGKESVVFHAYGGSLEDEKEDG
KAIPTECAIKVFKTTLNEFKNRDKYIKDDFRFKDRFSKLNPRKIIRMWAEKEMHNLTRMQKAGIPCPTVV
LLKKHILVMSFIGHDQVPAPKLKEVKLSNEEMKDAYYQTLHLMQQLYNECTLVHADLSEYNMLWHAGKVW
LIDVSQSVEPTHPHGLEFLFRDCRNVSQFFQKGGVTEALNERELFNAVSGLNISADNEADFLAEIEALEK
MNEDHIQKNGRKAASFLKDDGSPPVLSAD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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