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Report for CCDS28984.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28984.1 Public Mus musculus 17 Cdc42ep3 23 108 98 CCDS HistoryNCBI Gene:260409Re-query CCDS DB by CCDS ID:28984.1Re-query CCDS DB by GeneID:260409See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28984.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000068958.8 ENSMUSP00000067217.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000068958.8Link to Ensembl Protein Viewer:ENSMUSP00000067217.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000068958Re-query CCDS DB by Protein ID:ENSMUSP00000067217
Original member Current member NCBI NM_026514.3 NP_080790.1 Accepted alive Link to Nucleotide Sequence:NM_026514.3Link to Protein Sequence:NP_080790.1Re-query CCDS DB by Nucleotide ID:NM_026514Re-query CCDS DB by Protein ID:NP_080790Link to BLAST:NP_080790.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080790.1 254 Q9CQC5 254 100% 0 0

Chromosomal Locations for CCDS 28984.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 79334725 79335489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (765 nt):
ATGCCTGCCAAGACCCCAATTTACCTGAAAGCGGCTAACAACAAGAAGGGAAAGAAATTTAAACTGAGGG
ACATTCTGTCCCCTGATATGATCAGTCCTCCCCTGGGGGACTTTCGTCACACTATACACATCGGCAAAGA
GGGCCAGCATGACGTCTTTGGGGATATTTCCTTTCTTCAAGGGAATTATGAGCTCTTGCCGGGAAACCAA
GAGAAGGCACACTCTGGCCAGTTCCCGGGGCATAACGACTTCTTCCGGGCCAACAGCACCTCGGACTCAA
TGTTCACAGAAACACCCTCCCCGGTGCTCAAAAATGCCATCTCCCTCCCCACCATTGGGGGATCCCAGGC
TCTGATGCTGCCCTTATTGTCCCCAGTGACATTTCATTCCAAACAGGAGTCCTTTGGGCGTCCTAAGTTG
CCAAGGCTCAGCTGTGAGCCTGTCATGGAAGAGAAAGTTCAGGAGCAAAGTAGTCTGTTAGAGAATGGGG
CAGTCCACCAGGGAGACACCTCGTGGGGCTCCAGTGGTTCCGGGTCTCAGTCCAGCCAGGGCCGCGACAG
CCACTCCTCCAGCCTGTCGGAACAGTCCTCCGACTGGCCCGCGGACGACATGTTTGAGCATCCTGCCTCC
TGTGAGCTTGTGAAGTCAAAGACTAAATCAGAAGAGTCCTTCTCTGACCTGACCGGCTCCCTGCTCTCCC
TGCAGTTGGATCTTGGGCCTTCACTTTTGGATGAAGTCCTGAATGTCATGGATAAAAATAAGTAG

Translation (254 aa):
MPAKTPIYLKAANNKKGKKFKLRDILSPDMISPPLGDFRHTIHIGKEGQHDVFGDISFLQGNYELLPGNQ
EKAHSGQFPGHNDFFRANSTSDSMFTETPSPVLKNAISLPTIGGSQALMLPLLSPVTFHSKQESFGRPKL
PRLSCEPVMEEKVQEQSSLLENGAVHQGDTSWGSSGSGSQSSQGRDSHSSSLSEQSSDWPADDMFEHPAS
CELVKSKTKSEESFSDLTGSLLSLQLDLGPSLLDEVLNVMDKNK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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