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Report for CCDS28929.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28929.1 Public Mus musculus 17 Gpr108 23 108 98 CCDS HistoryNCBI Gene:78308Re-query CCDS DB by CCDS ID:28929.1Re-query CCDS DB by GeneID:78308See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28929.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000233568.1 ENSMUSP00000156910.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000233568.1Link to Ensembl Protein Viewer:ENSMUSP00000156910.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000233568Re-query CCDS DB by Protein ID:ENSMUSP00000156910
Original member Current member NCBI NM_030084.4 NP_084360.2 Accepted alive Link to Nucleotide Sequence:NM_030084.4Link to Protein Sequence:NP_084360.2Re-query CCDS DB by Nucleotide ID:NM_030084Re-query CCDS DB by Protein ID:NP_084360Link to BLAST:NP_084360.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_084360.2 569 Q91WD0-1 569 100% 0 0

Chromosomal Locations for CCDS 28929.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 57235294 57235366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57235923 57236047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57236156 57236239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57236374 57236423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57236697 57236740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57236871 57237001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57237206 57237323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57237424 57237497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57237851 57237926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57238030 57238163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57242734 57242838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57242941 57243134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57244247 57244368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57245029 57245111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57245295 57245345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57246764 57246883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57247511 57247636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1710 nt):
ATGGCAGTGAGCGAGAGGAGGGGGCTCAGCGGCGAGAGCCCAACGCAGTGCCGATGGGGATACTTGTCGC
TGCTGGTGCTGACGCTGAGCGGCTGCTCAGGCCGTATCCACCGGCTGACTCTCACAGGGGAGAAGCGAGC
TGACATCCAACTGAACAGCTTCGGATTCTACACCAATGGTTCCCTGGAAGTAGAGCTGAGCTTACTGCGA
CTCAGCCTCCAGGAGACAGAAAAGAAGTTGCCAAAGGTGGGGTTCAGCTTGAGCAGAGTTCGGTCTGGCA
GTGTCCGCTCCTACTCGAGACGGAACTCCCATGAATGCCCTCTGGATAGAAACAGCAGCAACTTCCTGGT
CCTGTTCCTCATCAATATCAAGGACCTGCAGGTCCAAGTCCGAAAATATGGGGAGCAGAAGTTGTTCATC
TCCCCTGGCCTTCTCCCTGAAGCTCCCACCCAGTCAGGTCCCCCGAAACCAGACCCAGCAGGCACCCCCA
AGGACAACCACGTCATTCACCCATCTCCTACAGAGATGTCTGCAGTCAAGGAGAATCAGACAGCGCCCCA
GGTTTCAGGGGATAAAACTACCCCAGGGGAACACAGGCACTCATCCGAGAGACAGCCACCCACGCAGGAC
CCCAGTGGGAAGGAGAAGGATCAGGTGTTGGGACTGGGCCACCTCAATGACTCCTACAACTTCAGTTTCC
ACATTGTGATCAGCTCCAGGGCTGAGGAAGGCCAGTACAGCCTCAACTTCCACAACTGTCACAACTCCAT
CCCAGGCCAGGAGCAGCCATTCGACCTCACTGTGATGATCCGGGAGAAGAATCCAGAAGGCTTCTTGTCA
GCAGCCGAAATCCCCCTCTTCAAACTCTACCTGATCATGTCTGCCTGCTTTCTGGCCGCAGACATCTTCT
GGGTGTCCGTGCTCTGCAAGAACACATACAGTGTCTTCAAGATCCACTGGCTCATGGCAGCCCTGGCGTT
CACCAAGAGTGTCTCCCTACTCTTCCACAGCATCAACTACTACTTCATCAACAGCCAGGGCCACCCCATC
GAAGGCCTCGCGGTCATGCACTATATCACACACCTGCTGAAGGGCGCCCTTCTCTTCATCACCATCGCCT
TGATCGGCTCAGGCTGGGCCTTTGTGAAGTATATGCTGTCGGACAAGGAGAAGAAGATTTTTGGCATTGT
GATTCCCCTGCAGGTCCTGGCTAATGTAGCATACATTGTTATTGAGTCCCGTGAGGAGGGTGCCAGCGAC
TATGGACTCTGGAAGGAGATCTTGTTCCTGGTGGATCTCATCTGCTGTGGTGCCATCCTTTTCCCGGTGG
TCTGGTCCATTCGGCATCTGCAGGATGCATCCGGCACTGATGGGAAGGTGGCAGTGAACCTGGCCAGGCT
GAAGCTGTTCCGACATTACTACGTCATGGTCATCTGCTATATCTACTTTACACGTATCATCGCCATTCTG
CTGCAAGTAGCAGTGCCCTTCCAGTGGCAGTGGCTGTACCAGCTCTTGGTGGAGAGTTCCACACTGGCCT
TCTTCGTGCTCACTGGCTACAAGTTCCAGCCGGCTGGGGACAACCCATACCTGCAGCTGCCACAGGAGGA
TGAGGAGGACGTACAGATGGAGCAAGTGATGACAGACTCTGGGTTTCGGGAAGGCCTGTCCAAAGTTAAC
AAGACAGCCAGTGGCCGGGAGCTGTTGTGA

Translation (569 aa):
MAVSERRGLSGESPTQCRWGYLSLLVLTLSGCSGRIHRLTLTGEKRADIQLNSFGFYTNGSLEVELSLLR
LSLQETEKKLPKVGFSLSRVRSGSVRSYSRRNSHECPLDRNSSNFLVLFLINIKDLQVQVRKYGEQKLFI
SPGLLPEAPTQSGPPKPDPAGTPKDNHVIHPSPTEMSAVKENQTAPQVSGDKTTPGEHRHSSERQPPTQD
PSGKEKDQVLGLGHLNDSYNFSFHIVISSRAEEGQYSLNFHNCHNSIPGQEQPFDLTVMIREKNPEGFLS
AAEIPLFKLYLIMSACFLAADIFWVSVLCKNTYSVFKIHWLMAALAFTKSVSLLFHSINYYFINSQGHPI
EGLAVMHYITHLLKGALLFITIALIGSGWAFVKYMLSDKEKKIFGIVIPLQVLANVAYIVIESREEGASD
YGLWKEILFLVDLICCGAILFPVVWSIRHLQDASGTDGKVAVNLARLKLFRHYYVMVICYIYFTRIIAIL
LQVAVPFQWQWLYQLLVESSTLAFFVLTGYKFQPAGDNPYLQLPQEDEEDVQMEQVMTDSGFREGLSKVN
KTASGRELL


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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