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Report for CCDS28702.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28702.1 Public Mus musculus 17 Gtf2h4 23 108 98 CCDS HistoryNCBI Gene:14885Re-query CCDS DB by CCDS ID:28702.1Re-query CCDS DB by GeneID:14885See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28702.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000001565.14 ENSMUSP00000001565.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000001565.14Link to Ensembl Protein Viewer:ENSMUSP00000001565.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000001565Re-query CCDS DB by Protein ID:ENSMUSP00000001565
Original member Current member EBI ENSMUST00000160734.7 ENSMUSP00000124335.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000160734.7Link to Ensembl Protein Viewer:ENSMUSP00000124335.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000160734Re-query CCDS DB by Protein ID:ENSMUSP00000124335
Original member NCBI NM_010364.4 NP_034494.1 Updated not alive Link to Nucleotide Sequence:NM_010364.4Link to Protein Sequence:NP_034494.1Re-query CCDS DB by Nucleotide ID:NM_010364Re-query CCDS DB by Protein ID:NP_034494
Current member NCBI NM_010364.5 NP_034494.1 Accepted alive Link to Nucleotide Sequence:NM_010364.5Link to Protein Sequence:NP_034494.1Re-query CCDS DB by Nucleotide ID:NM_010364Re-query CCDS DB by Protein ID:NP_034494Link to BLAST:NP_034494.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034494.1 463 O70422 463 100% 0 0

Chromosomal Locations for CCDS 28702.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 35667830 35668002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35668428 35668506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35668610 35668657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35669309 35669439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35669629 35669761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35669948 35670031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35670190 35670258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35670365 35670476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35670657 35670745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35670866 35670962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35671226 35671357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35671993 35672097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35672686 35672825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1392 nt):
ATGGAGATCACCCCGGCGAGGGGTGGACTGAACCGAGCACACCTACAATGCAGGAATCTCCAGGAGTTCT
TAGGAGGCCTGAGCCCTGGGGTGCTGGACCGATTGTATGGGCACCCTGCCACTTGTCTGGCTGTCTTCAG
GGAGCTCCCCTCTTTGGCTAAGAACTGGGTCATGAGGATGCTCTTTCTGGAGCAGCCGCTACCACAGGCT
GCGGTGGCCCTGTGGGTGAAGAAGGAGTTCAGCAAGGCTCAGGAGGAAAGTACGGGGCTGCTGAGTGGCC
TCCGTATCTGGCATACCCAGCTGCTCCCTGGTGGACTCCAAGGCCTCATCTTGAACCCCGTCTTCCGCCA
GAACCTCCGAATTGCCCTTCTGGGTGGGGGCAAGGCCTGGTCTGATGACACAAGTCAGCTGGGACCAGAC
AAGCATGCCCGGGACGTCCCCTCACTGGACAAGTATGCTGAGGAGCGCTGGGAGGTGGTCTTGCACTTCA
TGGTGGGCTCCCCCAGTGCAGCTGTCAGCCAAGACCTGGCTCAGCTCCTCAGCCAGGCCGGGCTTATGAA
AAGCACTGAACCTGGAGAGCCACCCTGCATCACTTCCGCTGGCTTCCAGTTCCTGCTACTGGACACGCCT
GCCCAGCTCTGGTACTTCATGCTGCAGTATCTGCAGACAGCCCAGAGCCGGGGCATGGATCTGGTGGAGA
TTCTCTCCTTCCTTTTCCAGCTCAGCTTCTCCACTCTTGGCAAGGACTACTCTGTGGAGGGGATGAGTGA
CTCTTTGTTGAACTTCCTGCAACACCTGCGTGAGTTCGGGCTTGTTTTCCAGAGGAAGAGGAAGTCCCGG
CGTTACTACCCCACACGCCTGGCCATCAACCTCTCATCTGGTGTCTCTGGGGCTGGGGGCACTGTGCACC
AGCCAGGCTTCATTGTCGTGGAAACTAATTACCGACTGTACGCCTATACCGAGTCGGAACTGCAGATCGC
TCTCATTGCCCTTTTCTCCGAAATGCTCTATCGATTCCCCAACATGGTGGTGGCACAAGTGACCCGGGAG
AGTGTGCAGCAGGCCATTGCTAGTGGCATCACAGCTCAGCAGATAATCCATTTCCTAAGGACAAGGGCAC
ATCCAGTGATGCTCAAACAGAATCCTGTGCTGCCCCCCACCATAACAGACCAGATTCGGCTGTGGGAGCT
GGAAAGGGACAGACTCCGGTTCACTGAAGGCGTCCTGTATAACCAGTTCCTGTCGCAAGTGGACTTTGAA
CTGCTGCTGGCCCACGCGCGGGAGCTGGGCGTGCTTGTGTTCGAGAACTCGGCCAAGCGGCTGATGGTGG
TGACGCCGGCAGGGCACAGCGACGTCAAGCGCTTCTGGAAGCGGCAGAAGCACAGCTCCTGA

Translation (463 aa):
MEITPARGGLNRAHLQCRNLQEFLGGLSPGVLDRLYGHPATCLAVFRELPSLAKNWVMRMLFLEQPLPQA
AVALWVKKEFSKAQEESTGLLSGLRIWHTQLLPGGLQGLILNPVFRQNLRIALLGGGKAWSDDTSQLGPD
KHARDVPSLDKYAEERWEVVLHFMVGSPSAAVSQDLAQLLSQAGLMKSTEPGEPPCITSAGFQFLLLDTP
AQLWYFMLQYLQTAQSRGMDLVEILSFLFQLSFSTLGKDYSVEGMSDSLLNFLQHLREFGLVFQRKRKSR
RYYPTRLAINLSSGVSGAGGTVHQPGFIVVETNYRLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRE
SVQQAIASGITAQQIIHFLRTRAHPVMLKQNPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFE
LLLAHARELGVLVFENSAKRLMVVTPAGHSDVKRFWKRQKHSS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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