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Report for CCDS28589.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28589.1 Public Mus musculus 17 Stk38 23 108 98 CCDS HistoryNCBI Gene:106504Re-query CCDS DB by CCDS ID:28589.1Re-query CCDS DB by GeneID:106504See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 28589.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000009138.12 ENSMUSP00000009138.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000009138.12Link to Ensembl Protein Viewer:ENSMUSP00000009138.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000009138Re-query CCDS DB by Protein ID:ENSMUSP00000009138
Original member Current member EBI ENSMUST00000119274.2 ENSMUSP00000113657.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000119274.2Link to Ensembl Protein Viewer:ENSMUSP00000113657.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000119274Re-query CCDS DB by Protein ID:ENSMUSP00000113657
Original member Current member EBI ENSMUST00000232836.1 ENSMUSP00000156711.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000232836.1Link to Ensembl Protein Viewer:ENSMUSP00000156711.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000232836Re-query CCDS DB by Protein ID:ENSMUSP00000156711
Original member Current member NCBI NM_001357173.1 NP_001344102.1 Accepted alive Link to Nucleotide Sequence:NM_001357173.1Link to Protein Sequence:NP_001344102.1Re-query CCDS DB by Nucleotide ID:NM_001357173Re-query CCDS DB by Protein ID:NP_001344102Link to BLAST:NP_001344102.1
Original member Current member NCBI NM_134115.3 NP_598876.1 Accepted alive Link to Nucleotide Sequence:NM_134115.3Link to Protein Sequence:NP_598876.1Re-query CCDS DB by Nucleotide ID:NM_134115Re-query CCDS DB by Protein ID:NP_598876Link to BLAST:NP_598876.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001344102.1 465 Q91VJ4 465 100% 0 0
NP_598876.1 465 Q91VJ4 465 100% 0 0

Chromosomal Locations for CCDS 28589.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 28972546 28972676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28973045 28973139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28974282 28974377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28974546 28974669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28975819 28975936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28977540 28977601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28979203 28979305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28982032 28982186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28984077 28984200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28988178 28988261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28991298 28991420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28992417 28992468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 29000009 29000139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1398 nt):
ATGGCAATGACAGGATCAACACCTTGCTCATCCATGAGTAATCATACGAAGGAGAGGGTGACAATGACCA
AAGTGACACTGGAGAATTTTTATAGCAACCTTATCGCTCAACATGAAGAACGAGAAATGAGACAAAAGAA
GTTAGAAAAGGTGATGGAAGAAGAAGGCCTGAAAGACGAAGAGAAACGACTCAGAAGATCCGCGCACGCT
CGGAAGGAAACAGAGTTTCTTCGATTAAAGAGAACAAGGCTTGGACTGGAAGATTTTGAGTCTTTAAAAG
TCATAGGCCGAGGAGCATTTGGTGAGGTGCGGCTTGTTCAGAAGAAAGACACAGGGCATGTGTACGCAAT
GAAAATCCTGCGCAAAGCAGACATGCTCGAGAAGGAGCAGGTTGGCCACATTCGTGCGGAGCGTGACATT
CTAGTGGAGGCAGACAGTTTGTGGGTTGTGAAAATGTTCTATAGTTTTCAGGATAAGCTAAACCTCTACC
TAATCATGGAGTTCCTGCCTGGAGGGGACATGATGACTTTATTGATGAAAAAAGATACTCTGACAGAAGA
GGAGACTCAGTTTTATATAGCAGAGACAGTATTAGCCATAGACTCCATTCACCAGCTGGGATTCATCCAC
AGAGATATCAAGCCAGACAACCTTCTCTTGGACAGCAAGGGCCATGTGAAACTTTCCGACTTTGGCCTTT
GCACAGGCCTGAAAAAAGCACACAGGACAGAATTTTATAGGAACCTGAACCACAGCCTGCCCAGTGATTT
CACTTTTCAGAACATGAATTCCAAAAGGAAAGCAGAGACCTGGAAAAGAAACAGACGCCAGCTAGCCTTC
TCTACAGTGGGCACTCCTGACTACATTGCTCCAGAGGTGTTCATGCAGACGGGTTACAACAAGCTCTGCG
ATTGGTGGTCGCTCGGGGTAATCATGTATGAGATGCTCATCGGCTACCCACCATTCTGCTCCGAGACCCC
ACAAGAGACATACAAGAAAGTGATGAACTGGAAGGAAACTTTGACCTTTCCTCCAGAAGTTCCTGTCTCC
GAGAAAGCCAAGGGCCTGATTCTGAGGTTCTGCTGTGAATGGGAACATAGAATCGGAGCCCCTGGAGTTG
AAGAAATAAAAAATAATCTTTTTTTTGAAGGTGTTGACTGGGAACACATCAGGGAGAGACCAGCTGCGAT
ATCTATTGAAATCAAGAGCATCGATGATACCTCAAACTTCGATGAATTTCCAGAGTCTGATATTCTTAAG
CCCACAGTGACCACAAGTAGTCATCCTGAGACGGACTACAAGAACAAAGACTGGGTCTTCATCAATTACA
CATACAAGCGCTTCGAGGGCCTGACAGCCAGGGGGGCCATACCTTCGTACATGAAAGCAGCAAAATAG

Translation (465 aa):
MAMTGSTPCSSMSNHTKERVTMTKVTLENFYSNLIAQHEEREMRQKKLEKVMEEEGLKDEEKRLRRSAHA
RKETEFLRLKRTRLGLEDFESLKVIGRGAFGEVRLVQKKDTGHVYAMKILRKADMLEKEQVGHIRAERDI
LVEADSLWVVKMFYSFQDKLNLYLIMEFLPGGDMMTLLMKKDTLTEEETQFYIAETVLAIDSIHQLGFIH
RDIKPDNLLLDSKGHVKLSDFGLCTGLKKAHRTEFYRNLNHSLPSDFTFQNMNSKRKAETWKRNRRQLAF
STVGTPDYIAPEVFMQTGYNKLCDWWSLGVIMYEMLIGYPPFCSETPQETYKKVMNWKETLTFPPEVPVS
EKAKGLILRFCCEWEHRIGAPGVEEIKNNLFFEGVDWEHIRERPAAISIEIKSIDDTSNFDEFPESDILK
PTVTTSSHPETDYKNKDWVFINYTYKRFEGLTARGAIPSYMKAAK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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