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Report for CCDS28408.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28408.1 Public Mus musculus 17 Dynlt2a1 23 108 98 CCDS HistoryNCBI Gene:21647Re-query CCDS DB by CCDS ID:28408.1Re-query CCDS DB by GeneID:21647See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28408.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000040746.7 ENSMUSP00000036704.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000040746.7Link to Ensembl Protein Viewer:ENSMUSP00000036704.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000040746Re-query CCDS DB by Protein ID:ENSMUSP00000036704
Original member Current member NCBI NM_011560.3 NP_035690.2 Accepted alive Link to Nucleotide Sequence:NM_011560.3Link to Protein Sequence:NP_035690.2Re-query CCDS DB by Nucleotide ID:NM_011560Re-query CCDS DB by Protein ID:NP_035690Link to BLAST:NP_035690.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035690.2 191 P11985-1 191 99.4764% 0 1

Chromosomal Locations for CCDS 28408.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 15027207 15027317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 15030509 15030664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 15033347 15033553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 15041296 15041397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (576 nt):
ATGGAGCGGCGAGGCCGAATGGCGAAGACGCCCACCGGCCAAACGCATCAATCCCCGGTGTCTAAGAGAG
AAAGGAAGCCTAGCATGTTCGAGAAGGAGTCATATGCACAGATCTTAAGAGAAAGACTGAGAGAGTCTTT
TCATGATGTTCAGTACGTGGAACCTCCGTTTGATGACTCAATTGCTGATGTAGGCAAAGAATGGAAAAGT
GCCCTGGCAAAATTAAAGTTTGCTAATTCATACAGAATGGAGCCACTGAAGAAATTTCAAGCACATTTGG
TAGAAACTAAAATCCAGCAGATATTAAAGGACAGTCTTAAAGATGTCAAATATGATGACAAAGCCCCTCA
TTTGTCACTTGAATTGGCAGATCGAATATTGGCAGCAGTCAAAGAATTTGCATACCATCGTTATAAATTC
ATTATACAAGTATTATTTATTCAAAAGACTGGTCAAGCAATAAATATTGCCAGCAGATGGATCTGGGATG
TGGCATGGGACAACTGGGTAGAAGCTAAACATGAAACAGAGTCTTACGTGGTATTGGCCTTGGTGTTTGC
TCTCTATTGTGAATAG

Translation (191 aa):
MERRGRMAKTPTGQTHQSPVSKRERKPSMFEKESYAQILRERLRESFHDVQYVEPPFDDSIADVGKEWKS
ALAKLKFANSYRMEPLKKFQAHLVETKIQQILKDSLKDVKYDDKAPHLSLELADRILAAVKEFAYHRYKF
IIQVLFIQKTGQAINIASRWIWDVAWDNWVEAKHETESYVVLALVFALYCE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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