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Report for CCDS28397.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28397.1 Public Mus musculus 17 Tcp1 23 108 98 CCDS HistoryNCBI Gene:21454Re-query CCDS DB by CCDS ID:28397.1Re-query CCDS DB by GeneID:21454See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28397.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000151287.7 ENSMUSP00000116108.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000151287.7Link to Ensembl Protein Viewer:ENSMUSP00000116108.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000151287Re-query CCDS DB by Protein ID:ENSMUSP00000116108
Original member Current member NCBI NM_013686.4 NP_038714.2 Accepted alive Link to Nucleotide Sequence:NM_013686.4Link to Protein Sequence:NP_038714.2Re-query CCDS DB by Nucleotide ID:NM_013686Re-query CCDS DB by Protein ID:NP_038714Link to BLAST:NP_038714.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038714.2 556 P11983-1 556 100% 0 0

Chromosomal Locations for CCDS 28397.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 12916566 12916629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 12917798 12917883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 12918043 12918171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 12919351 12919448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 12919815 12919925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 12920276 12920457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 12920740 12920866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 12922103 12922278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 12922609 12922732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 12923218 12923410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 12923530 12923693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 12924260 12924476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1671 nt):
ATGGAGGGTCCTTTGTCCGTGTTCGGGGACCGCAGCACTGGGGAGGCGGTCCGCTCCCAGAATGTTATGG
CTGCAGCTTCTATTGCCAACATTGTTAAAAGTTCTTTTGGGCCAGTTGGCTTGGATAAAATGTTGGTGGA
TGATATTGGTGATGTAACCATTACTAACGATGGTGCCACCATCCTGAAGTTACTGGAGGTAGAACATCCC
GCAGCCAAAGTTCTGTGTGAGCTGGCTGACCTGCAAGACAAAGAAGTTGGAGATGGAACTACCTCAGTGG
TAATCATTGCAGCGGAGCTTCTGAAAAATGCAGATGAGCTAGTCAAACAGAAAATTCATCCAACATCAGT
TATTAGTGGCTATCGTCTTGCCTGCAAGGAAGCGGTGCGTTATATCAATGAGAACCTGATTATTAACACA
GACGAACTTGGAAGAGACTGTCTGATCAATGCTGCTAAGACATCCATGTCATCCAAAATTATTGGAATAA
ATGGTGATTACTTTGCTAATATGGTAGTAGATGCTGTGCTTGCTGTTAAATACACAGATGCCAGAGGCCA
GCCTCGCTATCCAGTCAATTCTGTTAATATTCTGAAAGCCCATGGGAGAAGTCAGATAGAAAGCATGCTG
ATCAATGGCTATGCGCTCAATTGTGTGGTTGGATCTCAGGGCATGCCCAAGAGAATAGTTAATGCAAAAA
TTGCTTGTCTTGACTTCAGCCTGCAGAAAACAAAAATGAAGCTTGGTGTACAGGTGGTTATTACAGACCC
TGAGAAATTGGACCAAATTAGACAGAGAGAATCGGATATCACCAAGGAGAGAATTCAGAAGATCCTGGCA
ACTGGTGCCAATGTTATTCTAACCACTGGTGGCATTGATGATATGTATCTCAAGTATTTTGTGGAAGCTG
GTGCCATGGCTGTTAGGAGAGTTTTAAAACGAGACCTGAAGCATGTTGCAAAAGCTTCTGGAGCAAGTAT
CCTGTCTACGCTGGCCAATTTGGAAGGCGAAGAAACTTTTGAAGTGACGATGTTGGGACAAGCGGAAGAG
GTCGTACAGGAGAGAATTTGTGATGATGAGCTGATCTTAATCAAAAATACTAAGGCTCGTACATCTGCTT
CAATCATCTTACGAGGAGCAAATGATTTCATGTGTGATGAAATGGAGCGCTCTTTACATGATGCTCTTTG
TGTGGTGAAGAGAGTTTTGGAGTTGAAATCTGTGGTCCCAGGTGGAGGTGCTGTAGAAGCTGCCCTGTCC
ATATACCTGGAAAACTATGCAACAAGCATGGGATCTCGGGAACAGCTTGCTATTGCAGAGTTTGCAAGAT
CTCTGCTTGTGATTCCTAATACACTGGCAGTGAATGCTGCCCAGGACTCCACCGACCTGGTTGCCAAGTT
AAGAGCTTTTCACAATGAGGCTCAAGTGAACCCGGAACGTAAAAATCTAAAGTGGATTGGTCTTGATTTG
GTCCATGGGAAACCACGAGACAACAAGCAAGCAGGGGTGTTTGAACCAACCATAGTTAAAGTGAAGAGCC
TGAAGTTCGCAACAGAGGCTGCAATCACCATCCTTCGGATTGATGATCTGATAAAATTACACCCAGAAAG
CAAAGACGATAAACACGGAAGTTATGAAAATGCTGTTCACTCTGGAGCCCTTGATGACTGA

Translation (556 aa):
MEGPLSVFGDRSTGEAVRSQNVMAAASIANIVKSSFGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHP
AAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRYINENLIINT
DELGRDCLINAAKTSMSSKIIGINGDYFANMVVDAVLAVKYTDARGQPRYPVNSVNILKAHGRSQIESML
INGYALNCVVGSQGMPKRIVNAKIACLDFSLQKTKMKLGVQVVITDPEKLDQIRQRESDITKERIQKILA
TGANVILTTGGIDDMYLKYFVEAGAMAVRRVLKRDLKHVAKASGASILSTLANLEGEETFEVTMLGQAEE
VVQERICDDELILIKNTKARTSASIILRGANDFMCDEMERSLHDALCVVKRVLELKSVVPGGGAVEAALS
IYLENYATSMGSREQLAIAEFARSLLVIPNTLAVNAAQDSTDLVAKLRAFHNEAQVNPERKNLKWIGLDL
VHGKPRDNKQAGVFEPTIVKVKSLKFATEAAITILRIDDLIKLHPESKDDKHGSYENAVHSGALDD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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