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Report for CCDS28380.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28380.1 Public Mus musculus 17 Cep43 23 108 98 CCDS HistoryNCBI Gene:75296Re-query CCDS DB by CCDS ID:28380.1Re-query CCDS DB by GeneID:75296See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28380.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000024636.14 ENSMUSP00000024636.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000024636.14Link to Ensembl Protein Viewer:ENSMUSP00000024636.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000024636Re-query CCDS DB by Protein ID:ENSMUSP00000024636
Original member Current member NCBI NM_201230.5 NP_957682.1 Accepted alive Link to Nucleotide Sequence:NM_201230.5Link to Protein Sequence:NP_957682.1Re-query CCDS DB by Nucleotide ID:NM_201230Re-query CCDS DB by Protein ID:NP_957682Link to BLAST:NP_957682.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_957682.1 379 Q66JX5-2 379 100% 0 0

Chromosomal Locations for CCDS 28380.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 8165597 8165698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 8165924 8165977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 8169035 8169089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 8169528 8169616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 8170006 8170143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 8172928 8173008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 8182228 8182454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 8184401 8184513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 8186513 8186581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 8191398 8191437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 8192185 8192281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 8194521 8194595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1140 nt):
ATGGCGGCGACTACCGCCGCGGTGGTGGCCGAGGAAGACACGGAGCTGCGCGACCTGCTGGTGCAGACGC
TGGAGAACAGCGGCGTGCTGAACCGCATCAAGGCTGAACTCAGAGCGGCTGTGTTTTTAGCACTAGAAGA
ACAAGAAAAAGTAGAGAACAAAACTCCATTGGTCAATGAGAACTTGAAAAAGTTTTTAAACACAAAAGAT
GGTCGTTTAGTGGCTAGTCTCGTCGCAGAATTTCTTCAGTTTTTTAATCTTGACTTCACCTTGGCTGTTT
TCCATCCTGAAACTAGCACAATTCAAGGTCTTGAAGGTCGAGAGAACTTGGCCCAGGATTTAGGCATCAT
TGAAGCAGAAGGTACTGTGGGTGGACCCTTATTATTAGAAGTGATTAGACGCTGTCAACAGAAAGAAAAA
GGACCGGCCAGTGTGGAAGGTGCACTGGATCTATCCGATGGACATCCTCCATCAAAGTCACCTGAAGGAA
AATCAAGTGCAAACTCCACCCCAAGTAAGAAGACTAGCAGTGAGACCAGTCAGAGTGAGCCAAGTGTCTC
CTTGTCAGAGTCCAAGAGTAAAAGCAGCCTGCACTCACTGGCCCATGAGACAAGAATTGCATCTTTCTTA
AGCAGCAGCGCTGTAGATGCCAGAGACAGCAGTGCCCTTTGTCCAGATGGGGATGATGTGGAAGGAGATT
CTTTCTTTGATGATCCCATTCCTAAACCAGAAAAAACCTATGGTTGGAGAGCTGAACCTCGGAAGCAAGT
GGGAGGTCTGGCCTCACTGTCTGACAAGCCCCACTTAAGGAGCGGTCTCAGCTCCCTGGCCGGAGCCCCA
TCGCTAACAGATCCAGAGAGTAAAAGGGGAAGCACCGTCCTGAAGGATCTGAAATTGGTTGGTGAGAAGA
TTGGATCACTTGGGCTAGGCACTGGAGAAGATGAGGACTATGCTGATGATTTTAATAGTGCTAGCCATCG
CTCAGAAAAAAGTGAGCTAAGTATTGGTGAAGAGATTGAAGAAGACCTTTCCATGGGAGTAGAGGACGGG
AACACCAGTGATAAACTCGATGACCTCACACAAGACCTGACTGTTTCCCAGCTCAGTGATGTTGCTGACT
ATCTGGAAGATGTTGCATAG

Translation (379 aa):
MAATTAAVVAEEDTELRDLLVQTLENSGVLNRIKAELRAAVFLALEEQEKVENKTPLVNENLKKFLNTKD
GRLVASLVAEFLQFFNLDFTLAVFHPETSTIQGLEGRENLAQDLGIIEAEGTVGGPLLLEVIRRCQQKEK
GPASVEGALDLSDGHPPSKSPEGKSSANSTPSKKTSSETSQSEPSVSLSESKSKSSLHSLAHETRIASFL
SSSAVDARDSSALCPDGDDVEGDSFFDDPIPKPEKTYGWRAEPRKQVGGLASLSDKPHLRSGLSSLAGAP
SLTDPESKRGSTVLKDLKLVGEKIGSLGLGTGEDEDYADDFNSASHRSEKSELSIGEEIEEDLSMGVEDG
NTSDKLDDLTQDLTVSQLSDVADYLEDVA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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