NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS28359.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28359.1 Public Mus musculus 16 Bace2 23 108 98 CCDS HistoryNCBI Gene:56175Re-query CCDS DB by CCDS ID:28359.1Re-query CCDS DB by GeneID:56175See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28359.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000047275.7 ENSMUSP00000043918.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000047275.7Link to Ensembl Protein Viewer:ENSMUSP00000043918.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000047275Re-query CCDS DB by Protein ID:ENSMUSP00000043918
Original member Current member NCBI NM_019517.5 NP_062390.3 Accepted alive Link to Nucleotide Sequence:NM_019517.5Link to Protein Sequence:NP_062390.3Re-query CCDS DB by Nucleotide ID:NM_019517Re-query CCDS DB by Protein ID:NP_062390Link to BLAST:NP_062390.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_062390.3 514 Q9JL18 514 99.6109% 0 2

Chromosomal Locations for CCDS 28359.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 97356802 97357101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 97399634 97399722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 97408277 97408493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 97412058 97412186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 97413349 97413483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 97415079 97415180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 97421850 97421999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 97424490 97424658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 97436642 97436895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1545 nt):
ATGGGCGCGCTGCTTCGAGCACTCTTGCTCCCGGTGCTGGCGCAGTGGCTCTTGAGTGCGGTCCCCGCGC
TGGCCCCCGCGCCCTTCACGCTGCCCCTCCAAGTGGCCCGGGCCACGAACCACAGAGCCTCGGCTGTTCC
CGGACTCGGGACCCCCGAGTTGCCCCGGGCCGATGGTCTGGCCCTCGCACTGGAGCCTGTCAGGGCTACT
GCCAACTTCTTGGCTATGGTGGACAACCTTCAGGGGGACTCTGGCCGCGGCTACTACCTAGAGATGCTGA
TCGGGACCCCTCCGCAGAAGGTACAGATTCTTGTGGACACTGGAAGCAGTAACTTCGCTGTGGCAGGTGC
CCCACACTCCTACATAGACACCTACTTTGACTCAGAGAGCTCCAGCACATACCACTCCAAGGGCTTTGAT
GTCACTGTGAAGTACACACAGGGAAGCTGGACTGGCTTTGTTGGTGAGGACCTTGTCACCATCCCAAAAG
GCTTCAACAGCTCTTTCTTGGTCAATATTGCCACTATTTTCGAGTCTGAGAATTTCTTTTTGCCTGGTAT
TAAATGGAATGGAATCCTTGGACTTGCTTATGCTGCTTTGGCCAAGCCATCAAGCTCTCTGGAGACATTT
TTTGATTCCCTGGTGGCCCAAGCAAAGATTCCAGACATTTTCTCCATGCAGATGTGCGGGGCTGGATTGC
CAGTAGCTGGTTCTGGTACCAACGGAGGTAGTCTTGTCCTGGGTGGGATTGAACCAAGTTTGTATAAAGG
AGATATCTGGTATACCCCAATTAAAGAGGAATGGTACTATCAAATAGAAATCCTGAAGTTGGAAATTGGA
GGCCAGAACCTCAACCTGGACTGCAGAGAGTATAACGCAGACAAGGCCATTGTGGACAGTGGCACCACGC
TCCTGCGCCTGCCCCAGAAGGTGTTTGATGCAGTGGTGGAAGCTGTGGCACGAACATCTCTGATTCCAGA
GTTTTCTGATGGCTTCTGGACAGGGGCCCAGCTGGCATGCTGGACAAATTCTGAAACGCCATGGGCATAT
TTCCCTAAGATTTCTATCTACCTGAGAGATGAGAATGCCAGTCGCTCCTTCCGGATCACCATTCTCCCAC
AGCTCTACATTCAGCCCATGATGGGAGCTGGTTTCAATTATGAATGCTACCGTTTTGGTATCTCCTCTTC
CACAAATGCGCTGGTGATTGGTGCGACCGTGATGGAAGGCTTCTACGTGGTCTTTGACAGAGCTCAGAGG
AGGGTGGGCTTTGCAGTGAGTCCCTGTGCAGAGATTGAAGGTACCACAGTGTCTGAAATTTCTGGGCCCT
TTTCCACGGAAGACATAGCCAGCAACTGTGTTCCAGCACAGGCTCTGAATGAGCCCATCTTGTGGATTGT
GTCCTATGCCCTGATGAGTGTGTGTGGAGCCATTCTCCTGGTTCTGATCCTCCTCCTGCTGCTCCCGCTG
CACTGCCGTCATGCCCCCCGAGACCCTGAGGTAGTTAACGATGAGTCCTCACTAGTCAGACATCGCTGGA
AATGA

Translation (514 aa):
MGALLRALLLPVLAQWLLSAVPALAPAPFTLPLQVARATNHRASAVPGLGTPELPRADGLALALEPVRAT
ANFLAMVDNLQGDSGRGYYLEMLIGTPPQKVQILVDTGSSNFAVAGAPHSYIDTYFDSESSSTYHSKGFD
VTVKYTQGSWTGFVGEDLVTIPKGFNSSFLVNIATIFESENFFLPGIKWNGILGLAYAALAKPSSSLETF
FDSLVAQAKIPDIFSMQMCGAGLPVAGSGTNGGSLVLGGIEPSLYKGDIWYTPIKEEWYYQIEILKLEIG
GQNLNLDCREYNADKAIVDSGTTLLRLPQKVFDAVVEAVARTSLIPEFSDGFWTGAQLACWTNSETPWAY
FPKISIYLRDENASRSFRITILPQLYIQPMMGAGFNYECYRFGISSSTNALVIGATVMEGFYVVFDRAQR
RVGFAVSPCAEIEGTTVSEISGPFSTEDIASNCVPAQALNEPILWIVSYALMSVCGAILLVLILLLLLPL
HCRHAPRDPEVVNDESSLVRHRWK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH