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Report for CCDS28226.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28226.1 Public Mus musculus 16 Tmem45a 23 108 98 CCDS HistoryNCBI Gene:56277Re-query CCDS DB by CCDS ID:28226.1Re-query CCDS DB by GeneID:56277See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 28226.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023435.5 ENSMUSP00000023435.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023435.5Link to Ensembl Protein Viewer:ENSMUSP00000023435.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000023435Re-query CCDS DB by Protein ID:ENSMUSP00000023435
Original member Current member NCBI NM_019631.3 NP_062605.2 Accepted alive Link to Nucleotide Sequence:NM_019631.3Link to Protein Sequence:NP_062605.2Re-query CCDS DB by Nucleotide ID:NM_019631Re-query CCDS DB by Protein ID:NP_062605Link to BLAST:NP_062605.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_062605.2 273 Q60774 273 99.6337% 0 1

Chromosomal Locations for CCDS 28226.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 56806683 56806776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 56811526 56811671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 56822225 56822409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 56823388 56823594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 56825666 56825855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (822 nt):
ATGGGGAGTTTCAAAGGACATGCTCTCCCTGGGAGTTTCTTCTTCGCCATGGGCTTTTGGTGGACTATGA
AGAACATCCTGAAATCTGTCTACAAAAGGCAAACTCGAACCTGCTACCTTAACTCTAAAACATTATTACG
TCGGACAGAGATTTGGGAAGGAGTTGTTGTGCTTTTAATGTCTCTCACTGGTATAGCTGGTGAACAGTTT
ATCTCAGGAGGACCTGCCTTGATCTTGCATAAAGATGGCCAGTGGAACCAGATCCTGGGCTGGCATCACA
CAACCATGTACTTATTCTTTGGGCTACAGGGTATAACCCAAATCATATGTTTCACTACTAATGTACTTCC
ACTTTCCTCAAGCAAGTTAATGTTATCAATTGCCATCTTTGTGGAGACATTTATGTTCTACAACCACACA
CACGGTCGGGAAATGATTGACATTTTTGTACACCAACTTCTGGTCTTCGTTGGCACATTTTCGGGTCTGG
TTGCCTTCTTGGAGTTCCTCGTAAAGAACAACGCACTTCTGGAGCTCCTGCGGTGCAGTCTCCTCATGTT
TCAAGGAACCTGGTTCTGGCAGATGGCGTTTGTGCTGTACCCCCCTAGTGGAAGTGCTACATGGAACCTG
TCAGATATTCAAAATAAAATGTTTCTCTCAATGTGCTTTTGCTGGCATTATGCATCAATCCTTATCCTCA
TTGGAGTAAAATATGCTTTGGCCAACTGGTTAGTCAAGTCTAGGCTGAGGAAGGGCTGCACCTCAGAAGT
TGGACTCCTGAAGCATGCTGACCGTGAGCAAGAATCAGAAGAAGAAGTATGA

Translation (273 aa):
MGSFKGHALPGSFFFAMGFWWTMKNILKSVYKRQTRTCYLNSKTLLRRTEIWEGVVVLLMSLTGIAGEQF
ISGGPALILHKDGQWNQILGWHHTTMYLFFGLQGITQIICFTTNVLPLSSSKLMLSIAIFVETFMFYNHT
HGREMIDIFVHQLLVFVGTFSGLVAFLEFLVKNNALLELLRCSLLMFQGTWFWQMAFVLYPPSGSATWNL
SDIQNKMFLSMCFCWHYASILILIGVKYALANWLVKSRLRKGCTSEVGLLKHADREQESEEEV


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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