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Report for CCDS27990.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27990.1 Public Mus musculus 16 Top3b 23 108 98 CCDS HistoryNCBI Gene:21976Re-query CCDS DB by CCDS ID:27990.1Re-query CCDS DB by GeneID:21976See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27990.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023465.15 ENSMUSP00000023465.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023465.15Link to Ensembl Protein Viewer:ENSMUSP00000023465.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000023465Re-query CCDS DB by Protein ID:ENSMUSP00000023465
Original member Current member EBI ENSMUST00000232581.1 ENSMUSP00000156132.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000232581.1Link to Ensembl Protein Viewer:ENSMUSP00000156132.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000232581Re-query CCDS DB by Protein ID:ENSMUSP00000156132
Original member Current member NCBI NM_001326576.1 NP_001313505.1 Accepted alive Link to Nucleotide Sequence:NM_001326576.1Link to Protein Sequence:NP_001313505.1Re-query CCDS DB by Nucleotide ID:NM_001326576Re-query CCDS DB by Protein ID:NP_001313505Link to BLAST:NP_001313505.1
Original member Current member NCBI NM_011624.3 NP_035754.1 Accepted alive Link to Nucleotide Sequence:NM_011624.3Link to Protein Sequence:NP_035754.1Re-query CCDS DB by Nucleotide ID:NM_011624Re-query CCDS DB by Protein ID:NP_035754Link to BLAST:NP_035754.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001313505.1 862 Q9Z321 862 100% 0 0
NP_035754.1 862 Q9Z321 862 100% 0 0

Chromosomal Locations for CCDS 27990.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 16877947 16878016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 16878957 16879088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 16879319 16879425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 16880604 16880678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 16882501 16882697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 16883407 16883563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 16884239 16884352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 16885835 16885925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 16886605 16886759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 16886880 16886985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 16887577 16887723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 16887832 16888005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 16889483 16889611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 16890112 16890261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 16890582 16890682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 16891355 16891556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 16892415 16892896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2589 nt):
ATGAAGACCGTGCTCATGGTAGCAGAAAAGCCATCCCTGGCACAGTCCATTGCCAAAATCCTCTCCCGAG
GAAACATGTCCTCACACAAAGGGCTGAATGGGGCATGTTCAGTGCACAAGTACACAGGAACCTTTGCTGG
CCAACCTGTCCACTTCAAGATGACGTCTGTCTGCGGTCATGTGATGACACTGGATTTTCTGGGGAAGTAC
AACAAGTGGGATAAGGTGGATCCTGCAGAGCTCTTCAGCCAAGCTCCAACAGAGAAAAAGGAAGCTAACC
CCAAGCTGAACATGGTCAAGTTCCTGCAGGTGGAGGGCAGAGGCTGTGACTATGTTGTGCTGTGGCTGGA
CTGTGACAAGGAAGGGGAGAATATTTGCTTTGAGGTCCTTGATGCCGTTCTGCCTGTCATGAATAATGCC
CACAATGGTGAGAAGACAGTGTTTCGTGCCAGGTTCAGCTCCATCACTGATACAGACATCTGTAATGCCA
TGACCCGCCTGAGCGAGCCAGACCACAATGAGGCACTCTCAGTGGATGCCCGCCAGGAGCTAGACCTGCG
CATCGGCTGTGCATTCACTAGGTTTCAAACAAAGTATTTCCAGGGAAAATATGGCGATTTAGACAGCTCT
CTCATCTCCTTTGGGCCATGTCAGACTCCTACCCTGGGATTCTGTGTAGAAAGACATGATAAAATCCAGT
CCTTCAAGCCAGAGACCTACTGGGTGCTTCAGGCCAAGGTTCATACAGATAAAGAGGAGTCACTCCTTCT
GGACTGGGACCGTGTTAGAGTTTTCGACTGGGAGATTGCACAGATGTTTTTAAACATGACAAAGTTAGAA
AAAGAAGCTTGGGTGGAGGCTACAAGCAGGAAAGAAAAAGCCAAGCAGAGACCACTTGCTCTGAACACTG
TGGAGATGTTGCGTGTGGCCAGCTCAGCTCTGGGTATGGGACCACAGCACGCCATGCAAATAGCTGAGAG
ATTATACACACAGGGCTATATCAGCTACCCACGGACAGAAACCACCCACTATCCCGAGAACTTTGACCTG
AAGGGCTCTTTGCGACAGCAGGCCAATCACCCATACTGGGCAGACTCGGTAAAGCAGTTGTTAGCGGAAG
GCATCAACCGCCCTCGGAAAGGTCATGATGCTGGTGACCATCCTCCAATCACACCTATGAAGTCGGCTAC
AGAGGCTGAATTAGGAGGTGACGCATGGAGACTCTACGAGTATATCACCAGACACTTCATTGCCACAGTG
AGCCATGACTGCAAGTATCTCCAGAGCACTATCTCCTTCAGGATCGGGCCTGAACACTTTACATGCATGG
GAAAAACAGTTATTTCTCCAGGCTTCACAGAGATCATGCCTTGGCAGAGCGTGCCCCTGGAAGAGAGTCT
GCCCACGTGCCAGAAGGGTGATACCTTCACTGTGGGTGAAGTGAAGATGCTAGAGAAGCAGACGAGCCCA
CCGGACTATCTGACTGAGGCTGAGCTCATCACTCTCATGGAGAAGCATGGTATCGGGACTGATGCCAGTA
TCCCTGTGCACATCAACAATATCTGCCAGCGCAACTATGTTACTGTGGAGAGTGGCCGCCGACTCAAGCC
CACCAACCTTGGCATAGTTCTGGTGCATGGTTACTACAAGATTGATGCAGAGCTGGTACTCCCCACCATC
CGAAGCGCAGTGGAGAAGCAGCTGAATCTTATTGCCCAGGGCAAAGCTGACTACCACCAAGTTCTGGGCC
ATACCCTGGATATCTTCAAGAGAAAGTTCCACTACTTCGTTGATTCTATTGCTGGCATGGACGAGTTGAT
GGAGGTTTCCTTTTCACCCCTGGCTGCCACTGGCAAGCCCCTCTCACGCTGTGGGAAGTGCCATCGATTT
ATGAAGTACATCCAGGCCAAGCCAAGTCGCCTGCACTGCTCCCACTGTGATGAGACCTACACCCTCCCCC
AGAATGGTACCATCAAGCTCTACAAGGAGCTGCGGTGCCCATTGGATGACTTTGAACTGGTCCTGTGGTC
CTCAGGCTCCCGGGGCAAGAGCTACCCACTATGTCCCTACTGCTATAACCACCCACCCTTCCGAGACATG
AAGAAAGGCATGGGCTGCAATGAGTGCACACACCCCACCTGCCAGCACTCACTGAGTATGCTGGGCATTG
GCCAGTGCGTGGAATGCGAGAATGGAGTCCTTGTTCTGGACCCCACTTCTGGTCCCAAGTGGAAGGTGGC
CTGCAATACATGCAATGTGGTGGCACACTGCTTTGAAAATGCCCACCGAGTACGGGTATCTGCTGACACC
TGCAACACCTGCGAGGCTGCCTTGCTCGATGTAGACTTCAACAAGGCCAAGTCTCCCCTTCCTGGCAATG
AGACACAGCACACAGGCTGCATCTTCTGTGACCCCGTCTTCCAGGAGCTGGTGGAGCTTAAGCATGCAGC
CTCCTGCCACCCCATGCACCGAGGTGGGCCTGGAAGGAGGCAGGGTCGTGGGCGGGGCCGGGGCCGGAGA
CCTCCAGGAAAGCCCAACCCTAGGCGGCCAAAAGACAAGATGTCAGCTCTGGCTGCTTACTTTGTATGA

Translation (862 aa):
MKTVLMVAEKPSLAQSIAKILSRGNMSSHKGLNGACSVHKYTGTFAGQPVHFKMTSVCGHVMTLDFLGKY
NKWDKVDPAELFSQAPTEKKEANPKLNMVKFLQVEGRGCDYVVLWLDCDKEGENICFEVLDAVLPVMNNA
HNGEKTVFRARFSSITDTDICNAMTRLSEPDHNEALSVDARQELDLRIGCAFTRFQTKYFQGKYGDLDSS
LISFGPCQTPTLGFCVERHDKIQSFKPETYWVLQAKVHTDKEESLLLDWDRVRVFDWEIAQMFLNMTKLE
KEAWVEATSRKEKAKQRPLALNTVEMLRVASSALGMGPQHAMQIAERLYTQGYISYPRTETTHYPENFDL
KGSLRQQANHPYWADSVKQLLAEGINRPRKGHDAGDHPPITPMKSATEAELGGDAWRLYEYITRHFIATV
SHDCKYLQSTISFRIGPEHFTCMGKTVISPGFTEIMPWQSVPLEESLPTCQKGDTFTVGEVKMLEKQTSP
PDYLTEAELITLMEKHGIGTDASIPVHINNICQRNYVTVESGRRLKPTNLGIVLVHGYYKIDAELVLPTI
RSAVEKQLNLIAQGKADYHQVLGHTLDIFKRKFHYFVDSIAGMDELMEVSFSPLAATGKPLSRCGKCHRF
MKYIQAKPSRLHCSHCDETYTLPQNGTIKLYKELRCPLDDFELVLWSSGSRGKSYPLCPYCYNHPPFRDM
KKGMGCNECTHPTCQHSLSMLGIGQCVECENGVLVLDPTSGPKWKVACNTCNVVAHCFENAHRVRVSADT
CNTCEAALLDVDFNKAKSPLPGNETQHTGCIFCDPVFQELVELKHAASCHPMHRGGPGRRQGRGRGRGRR
PPGKPNPRRPKDKMSALAAYFV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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