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Report for CCDS27748.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27748.1 Public Mus musculus 15 Cimap1b 23 108 98 CCDS HistoryNCBI Gene:70113Re-query CCDS DB by CCDS ID:27748.1Re-query CCDS DB by GeneID:70113See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27748.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000049968.8 ENSMUSP00000053112.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000049968.8Link to Ensembl Protein Viewer:ENSMUSP00000053112.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000049968Re-query CCDS DB by Protein ID:ENSMUSP00000053112
Original member NCBI NM_001013022.1 NP_001013040.1 Updated not alive Link to Nucleotide Sequence:NM_001013022.1Link to Protein Sequence:NP_001013040.1Re-query CCDS DB by Nucleotide ID:NM_001013022Re-query CCDS DB by Protein ID:NP_001013040
Current member NCBI NM_001013022.2 NP_001013040.1 Accepted alive Link to Nucleotide Sequence:NM_001013022.2Link to Protein Sequence:NP_001013040.1Re-query CCDS DB by Nucleotide ID:NM_001013022Re-query CCDS DB by Protein ID:NP_001013040Link to BLAST:NP_001013040.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001013040.1 238 Q5M8M2 238 100% 0 0

Chromosomal Locations for CCDS 27748.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 89377696 89377872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 89378100 89378221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 89378335 89378439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 89378646 89378849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 89379070 89379178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (717 nt):
ATGGGCTCAGAAGTCTGGGTCGGCACTTGGCGGCCACATCGGCCCCGCGGCCCCATCGCGGCGCTCTACA
GAGGCCCGGGGCCAAAATACAAGCTGCCAACGAACACCGGTTACAAACTGCACGACCCGTCTCGGCCGCG
AGCCCCCGCCTTCTCCTTCGGCTCGCGTCCACCCTTGCGGCATGCAACCTGCGGACCCGGGCCGAGTTAC
CTGGTGCCTGCTCGCATGACTGTGCGCGGCACAGTTGGCTCCCCGGCCTTCTCCATCTACGGTCGCCTAA
GCCACACGGCGCCTGTCCTCACTCCGGGACCGGGCAGGTACTACCCAGAACGCGCGAGAAATGTGACGTA
CCCCAGCGCTCCTCGGCATACCATCGCTCCCCGAAACTGGGGCATCCTCGCAAAGCAAGAAACCCCAGGC
CCTGGGTCCTACACCGTGCCTTCGCTCTTGGGCTCACGAGTCATAAGCAAAGTCTCAGCCCCAACTTACT
CCATCTACAGCCGCAGCCCTGTGGGCAGCTGCTTCGAGGACCTCAGCAAGACCCCAGGCCCTTGTGCCTA
CCACGTAGTGAATCCTATGATCTACAAGACTCGAGCCCCGCAGTTCACGATGCTGGGGAGGACTCTGCCA
CCCCGAGAGAACACCAAGAAGCCAGGACCTGCATCCTACAGCGTGGACAAGGTGGTCTGGAGTCGAGGGT
CAAGGGGCAGGGGATGA

Translation (238 aa):
MGSEVWVGTWRPHRPRGPIAALYRGPGPKYKLPTNTGYKLHDPSRPRAPAFSFGSRPPLRHATCGPGPSY
LVPARMTVRGTVGSPAFSIYGRLSHTAPVLTPGPGRYYPERARNVTYPSAPRHTIAPRNWGILAKQETPG
PGSYTVPSLLGSRVISKVSAPTYSIYSRSPVGSCFEDLSKTPGPCAYHVVNPMIYKTRAPQFTMLGRTLP
PRENTKKPGPASYSVDKVVWSRGSRGRG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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