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Report for CCDS27570.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27570.1 Public Mus musculus 15 Bop1 23 108 98 CCDS HistoryNCBI Gene:12181Re-query CCDS DB by CCDS ID:27570.1Re-query CCDS DB by GeneID:12181See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27570.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023217.10 ENSMUSP00000023217.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023217.10Link to Ensembl Protein Viewer:ENSMUSP00000023217.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000023217Re-query CCDS DB by Protein ID:ENSMUSP00000023217
Original member Current member NCBI NM_013481.2 NP_038509.1 Accepted alive Link to Nucleotide Sequence:NM_013481.2Link to Protein Sequence:NP_038509.1Re-query CCDS DB by Nucleotide ID:NM_013481Re-query CCDS DB by Protein ID:NP_038509Link to BLAST:NP_038509.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038509.1 732 P97452 732 100% 0 0

Chromosomal Locations for CCDS 27570.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 76453225 76453378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76453463 76453570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76453644 76453728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76453817 76454105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76454178 76454358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76454452 76454584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76454674 76454743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76454818 76454898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76454970 76455131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76455208 76455420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76455496 76455597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76455682 76455799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76455872 76456026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76466772 76466852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76474748 76474921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 76477129 76477221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2199 nt):
ATGGCGGGGGCGTGTGGTAAGCCCCACATGTCACCGGCATCGCTGCCGGGGAAACGACGTTTGGAACCTG
ATCAGGAGCTGCAGATACAAGAGCCTCCTCTCCTCAGCGATCCTGACTCCAGTCTCTCTGACAGCGAGGA
GAGTGTGTTTTCAGGCCTCGAAGATTTGGGCAGTGACTCGAGTGAGGAAGACACTGAAGGAGTGGCCGGA
TCCAGCGGTGACGAAGACAACCATAGGGCAGAGGAGACCTCTGAGGAGCTGGCACAGGCTGCCCCTCTTT
GCTCAAGGACAGAGGAAGCAGGTGCTCTGGCCCAAGATGAATATGAAGAGGACAGCTCTGATGAGGAGGA
CATTCGGAACACTGTGGGCAATGTGCCCCTGGCATGGTACGATGAATTCCCACATGTGGGTTATGACCTG
GATGGCAAACGTATCTACAAGCCCCTGCGGACACGAGATGAGCTCGACCAGTTTCTGGACAAAATGGATG
ACCCAGATTTCTGGCGCACTGTGCAAGACAAGATGACAGGGCGTGATCTGCGGCTAACTGATGAGCAGGT
TGCCCTGGTACACCGGCTTCAGAGAGGCCAGTTCGGAGATTCAGGCTTCAATCCCTATGAGCCAGCTGTG
GACTTCTTCAGCGGTGACATCATGATCCACCCTGTGACCAACCGCCCAGCTGACAAGCGTAGTTTCATCC
CATCCCTAGTTGAAAAGGAGAAGGTGTCTCGAATGGTACATGCCATCAAGATGGGGTGGATCAAGCCTCG
ACGGCCCCACGACCCCACCCCTAGCTTCTATGACCTGTGGGCCCAGGAGGATCCGAATGCTGTGTTGGGA
CGCCACAAGATGCATGTGCCTGCCCCCAAGCTGGCCTTGCCTGGCCATGCCGAGTCTTACAACCCACCTC
CCGAGTACCTGCCCACTGAGGAGGAGCGCTCGGCGTGGATGCAGCAGGAGCCTGTGGAGAGGAAGCTTAA
CTTCTTGCCACAGAAATTCCCCAGCTTGAGGACAGTGCCTGCTTACAGCCGCTTCATCCAGGAGCGTTTC
GAGCGCTGCCTCGATTTGTATCTGTGCCCACGGCAACGCAAGATGAGGGTGAATGTGGACCCCGAAGACC
TCATCCCCAAACTCCCTCGGCCAAGAGACCTTCAGCCTTTCCCTGTGTGCCAGGCCCTCGTCTACAGGGG
CCACAGCGACCTTGTCCGTTGCCTCAGTGTCTCGCCAGGGGGCCAGTGGCTAGCTTCAGGTTCAGACGAT
GGCACGTTGAAGCTCTGGGAGGTGGCCACTGCCCGCTGTATGAAGACTGTACATGTTGGAGGTGTGGTGC
GGAGCATCGCCTGGAACCCCAATCCTACCATATGCCTGGTAGCTGCTGCCATGGATGATGCCGTGTTGCT
GCTGAACCCAGCCCTGGGGGACCGGCTGCTGGTGGGCAGCACAGACCAGCTGCTGGAAGCCTTCACTCCA
CCTGAGGAGCCAGCTCTGCAGCCTGCCCGGTGGCTAGAGGTCTCGGAGGAAGAGCACCAGAGGGGTCTGC
GCCTACGCATCTGCCACAGCAAACCAGTGACACAGGTGACCTGGCATGGGCGAGGGGACTATTTGGCGGT
GGTGCTGTCTAGTCAAGAGCACACGCAAGTGCTGCTTCACCAGGTGAGCAGGAGGCGCAGCCAGAGCCCG
TTCCGCCGCAGCCACGGGCAGGTGCAGTGTGTGGCCTTCCATCCCTCCCGGCCCTTCCTGCTCGTGGCCT
CCCAGCGCAGCATCCGCATTTACCACCTGCTGCGCCAGGAGCTAACCAAGAAGCTGATGCCCAACTGCAA
GTGGGTGTCCAGCATGGCTGTACATCCAGCAGGTGACAACATCATCTGTGGCAGCTATGACAGCAAACTG
GTGTGGTTTGACCTGGATCTTTCCACCAAGCCATACAAAGTGCTGAGGCACCACAAGAAGGCCTTGCGGG
CTGTGGCCTTCCACCCCCGATACCCACTCTTTGCATCCGGCTCAGACGACGGCAGTGTTATCGTGTGCCA
TGGCATGGTGTACAATGACCTGCTGCAGAACCCATTGCTGGTGCCTGTCAAGGTGCTGAAAGGACACACC
CTGACCCGAGATCTGGGTGTTCTGGATGTGGCCTTCCACCCCACACAGCCGTGGGTCTTCTCCTCCGGGG
CAGATGGCACCATTCGACTCTTCAGCTAA

Translation (732 aa):
MAGACGKPHMSPASLPGKRRLEPDQELQIQEPPLLSDPDSSLSDSEESVFSGLEDLGSDSSEEDTEGVAG
SSGDEDNHRAEETSEELAQAAPLCSRTEEAGALAQDEYEEDSSDEEDIRNTVGNVPLAWYDEFPHVGYDL
DGKRIYKPLRTRDELDQFLDKMDDPDFWRTVQDKMTGRDLRLTDEQVALVHRLQRGQFGDSGFNPYEPAV
DFFSGDIMIHPVTNRPADKRSFIPSLVEKEKVSRMVHAIKMGWIKPRRPHDPTPSFYDLWAQEDPNAVLG
RHKMHVPAPKLALPGHAESYNPPPEYLPTEEERSAWMQQEPVERKLNFLPQKFPSLRTVPAYSRFIQERF
ERCLDLYLCPRQRKMRVNVDPEDLIPKLPRPRDLQPFPVCQALVYRGHSDLVRCLSVSPGGQWLASGSDD
GTLKLWEVATARCMKTVHVGGVVRSIAWNPNPTICLVAAAMDDAVLLLNPALGDRLLVGSTDQLLEAFTP
PEEPALQPARWLEVSEEEHQRGLRLRICHSKPVTQVTWHGRGDYLAVVLSSQEHTQVLLHQVSRRRSQSP
FRRSHGQVQCVAFHPSRPFLLVASQRSIRIYHLLRQELTKKLMPNCKWVSSMAVHPAGDNIICGSYDSKL
VWFDLDLSTKPYKVLRHHKKALRAVAFHPRYPLFASGSDDGSVIVCHGMVYNDLLQNPLLVPVKVLKGHT
LTRDLGVLDVAFHPTQPWVFSSGADGTIRLFS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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