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Report for CCDS27553.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27553.1 Public Mus musculus 15 Eef1d 23 108 98 CCDS HistoryNCBI Gene:66656Re-query CCDS DB by CCDS ID:27553.1Re-query CCDS DB by GeneID:66656See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27553.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000089681.11 ENSMUSP00000087110.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000089681.11Link to Ensembl Protein Viewer:ENSMUSP00000087110.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000089681Re-query CCDS DB by Protein ID:ENSMUSP00000087110
Original member Current member EBI ENSMUST00000109975.9 ENSMUSP00000105602.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109975.9Link to Ensembl Protein Viewer:ENSMUSP00000105602.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000109975Re-query CCDS DB by Protein ID:ENSMUSP00000105602
Original member NCBI NM_029663.2 NP_083939.1 Updated not alive Link to Nucleotide Sequence:NM_029663.2Link to Protein Sequence:NP_083939.1Re-query CCDS DB by Nucleotide ID:NM_029663Re-query CCDS DB by Protein ID:NP_083939
Current member NCBI NM_029663.3 NP_083939.1 Accepted alive Link to Nucleotide Sequence:NM_029663.3Link to Protein Sequence:NP_083939.1Re-query CCDS DB by Nucleotide ID:NM_029663Re-query CCDS DB by Protein ID:NP_083939Link to BLAST:NP_083939.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083939.1 660 P57776-3 660 99.8485% 0 1

Chromosomal Locations for CCDS 27553.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 75895553 75895591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 75895732 75895926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 75896243 75896464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 75896640 75896740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 75896820 75896919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 75900691 75900762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 75901132 75901255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 75902679 75903808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1983 nt):
ATGAGGAGTGGGAAGGCCTCTTGTGCACTGGAGACCGTCTGGGAGGACAGGCACAAGTATGAGGGAGCCG
AGCGGCGCTTCCACGAGCAGGAGGCCACACAAGTCGTCGCCGCCGCCGCCACTGCCGCCGCCACTGCCTC
CGCCTCTGTCCAGCAGCTCCTGGACGAAGTGCCAGCTGTGAACGGGCCCAGCCAGGAGGACACAGAGGAC
ACTGAGGAGGCAGAGGCCCCAAACACCAGCAGCAGGAGTGATCCCGGGAAGAGCCACGAGTGCAAGAAGC
CGATACAGAAAAAGAGGAAGCGCTCCCCGAAAAGTTGGCTGGGCCAGGCAGACCTGGCCCTTGTGGGCCT
CTCGGCTGACCACGTATGGTTAGACAAGCCACTCTTCGACCAGGCAGAAAGCTCCTACCGTCAGAGGCTG
GCAGATGTAGCTGCCCAGGCAGCCCAGCCGCCTGCTCTGGCCCCTCGGGGGCCCTGTACACATGGAAGCC
ATGTGGCATGCCACCATGTAACCTGGGGGATCTGGGTCAACAAGTCTTGCTTTGATCAAGCCGAGCGGGC
TTTTGTGGAGTGGTCTCAGTCCTTGCTGCTGGCTGCAGAGGGGAGCCATAGGCAGGGGACTCCTGACACA
GGCCAGCAGGCTGTCACTCCTGACCTGGCCTTGGCCTGCCAGCCTTGCCCACCAGCCAATGGCCAGCCTC
CTCTGGGCAGCCTGCAGGCACTGGTGCGGGAGGTATGGCTGGAGAAGCCCCGGTACGATGCCGCTGAGAG
GGGCTTCTATGAGGCCCTGTTTGATGGTCATCCCCCAGGGAAAGTGCGCCTGCAGGAGCGAGCCAGTCAG
GCAGAGGGTACCCGGAGGGGCCGCAGAGACCATCGGAGCTGCAATAACGTAGGAAACAAGAGAGCTGGGT
CAAAACGGGCCAACGGGGAGGCTCCTCCTGCTTTTCCCTACTGGTACTTCCTACACAAGGACGCAGAGGC
CCCCTGGCTCAGCAAGCCTACCTACGACAGCGCTGAGTGCCGCCACCATGCCGTTGAGGCCCTGCGCATA
GCCTGGCGCCTAGAAGCTGCCTCCCTGGCTCACCGACCCACACCCCGTTCTGGCCCATCCATGTCCAGCC
TGAGACCCAACAGAAAAATGGCTACAAACTTTCTAGCGCATGAGAAGATCTGGTTTGACAAGTTTAAATA
TGATGATGCAGAAAGGAGATTCTATGAGCAGATGAACGGGCCTGTGACCTCCGGCTCCCGCCAGGAGAAT
GGTGCCAGCGTGATCCTCCGAGACATTGCAAGAGCCAGAGAGAACATCCAGAAATCCTTGGCTGGAAGCT
CAGGCCCTGGAGCCTCCAGTGGACCTGGTGGAGACCACAGTGAGCTCATTGTGAGGATTACCAGTCTGGA
AGTGGAGAACCAGAACCTTCGAGGCGTGGTGCAAGATTTGCAGCAGGCCATTTCCAAGTTGGAGGCCCGG
CTGAGCTCTCTAGAGAAGAGTTCACCTACTCCCCGAGCCACGGCCCCACAGACCCAACATGTCTCTCCTA
TGCGTCAAGTGGAGCCCCCAACCAAGAAAGGAGCCACACCAGCAGAGGACGATGAGGACAAGGACATTGA
CCTGTTCGGCAGTGACGAGGAGGAAGAAGATAAGGAGGCTGCCCGACTACGGGAGGAGAGGCTACGCCAG
TACGCAGAGAAGAAGGCCAAGAAGCCCACACTGGTGGCCAAATCCTCCATCCTTTTGGATGTTAAACCTT
GGGATGATGAGACTGACATGGCCCAGCTAGAGACTTGTGTGCGTTCCATCCAATTGGACGGGCTGGTTTG
GGGGGCCTCCAAGCTTGTGCCTGTTGGCTATGGCATCCGGAAGCTGCAGATCCAGTGTGTGGTGGAGGAT
GACAAAGTGGGCACCGACTTGCTCGAGGAGGAGATCACCAAATTTGAGGAGCATGTGCAGAGTGTCGACA
TCGCAGCTTTCAACAAGATCTGA

Translation (660 aa):
MRSGKASCALETVWEDRHKYEGAERRFHEQEATQVVAAAATAAATASASVQQLLDEVPAVNGPSQEDTED
TEEAEAPNTSSRSDPGKSHECKKPIQKKRKRSPKSWLGQADLALVGLSADHVWLDKPLFDQAESSYRQRL
ADVAAQAAQPPALAPRGPCTHGSHVACHHVTWGIWVNKSCFDQAERAFVEWSQSLLLAAEGSHRQGTPDT
GQQAVTPDLALACQPCPPANGQPPLGSLQALVREVWLEKPRYDAAERGFYEALFDGHPPGKVRLQERASQ
AEGTRRGRRDHRSCNNVGNKRAGSKRANGEAPPAFPYWYFLHKDAEAPWLSKPTYDSAECRHHAVEALRI
AWRLEAASLAHRPTPRSGPSMSSLRPNRKMATNFLAHEKIWFDKFKYDDAERRFYEQMNGPVTSGSRQEN
GASVILRDIARARENIQKSLAGSSGPGASSGPGGDHSELIVRITSLEVENQNLRGVVQDLQQAISKLEAR
LSSLEKSSPTPRATAPQTQHVSPMRQVEPPTKKGATPAEDDEDKDIDLFGSDEEEEDKEAARLREERLRQ
YAEKKAKKPTLVAKSSILLDVKPWDDETDMAQLETCVRSIQLDGLVWGASKLVPVGYGIRKLQIQCVVED
DKVGTDLLEEEITKFEEHVQSVDIAAFNKI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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