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Report for CCDS27402.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27402.1 Public Mus musculus 15 Ank 23 108 98 CCDS HistoryNCBI Gene:11732Re-query CCDS DB by CCDS ID:27402.1Re-query CCDS DB by GeneID:11732See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27402.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000022875.6 ENSMUSP00000022875.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000022875.6Link to Ensembl Protein Viewer:ENSMUSP00000022875.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000022875Re-query CCDS DB by Protein ID:ENSMUSP00000022875
Original member Current member NCBI NM_020332.4 NP_065065.3 Accepted alive Link to Nucleotide Sequence:NM_020332.4Link to Protein Sequence:NP_065065.3Re-query CCDS DB by Nucleotide ID:NM_020332Re-query CCDS DB by Protein ID:NP_065065Link to BLAST:NP_065065.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_065065.3 492 Q9JHZ2 492 100% 0 0

Chromosomal Locations for CCDS 27402.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 27467004 27467099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 27544251 27544467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 27553689 27553807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 27557164 27557247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 27562724 27562894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 27564902 27565036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 27567515 27567607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 27571559 27571654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 27590343 27590472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 27590918 27591041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 27591437 27591536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 27593104 27593217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1479 nt):
ATGGTGAAATTCCCGGCGCTCACGCACTACTGGCCCCTGATCCGGTTCCTGGTGCCCCTCGGCATCACCA
ACATAGCCATCGACTTCGGGGAGCAGGCCTTGAACCGGGGCATCGCTGCAGTCAAGGAGGATGCAGTAGA
AATGCTGGCCAGCTACGGGCTGGCGTATTCTTTGATGAAGTTCTTCACGGGGCCCATGAGTGACTTCAAA
AATGTGGGCCTGGTGTTCGTGAACAGCAAGAGAGACAGGGCCAAAGCCGTCCTCTGCATGGTGGTGGCCG
GTGCCATCGCTGCCGTCTTCCACACCCTGATAGCCTACAGTGACTTAGGGTACTACATCATCAACAAGCT
GCATCATGTGGATGAGTCTGTGGGGAGCAAAACACGAAGGGCCTTCCTGTATCTCGCTGCCTTCCCTTTT
ATGGATGCCATGGCGTGGACTCATGCTGGCATTCTCTTAAAACACAAATACAGTTTCCTGGTGGGATGTG
CCTCAATCTCAGATGTCATAGCTCAGGTTGTTTTCGTAGCCATTTTGCTTCACAGTCACCTGGAATGCCG
AGAACCGCTGCTCATCCCCATCCTGTCTCTGTACATGGGTGCGCTTGTGCGCTGCACCACACTGTGCCTG
GGCTACTACAGGAACATCCACGACATCATCCCCGACAGGAGCGGCCCAGAGCTGGGGGGTGATGCAACCA
TAAGAAAGATGCTGAGCTTCTGGTGGCCCCTGGCTCTGATCCTGGCCACGCAGCGAATCAGTCGGCCCAT
TGTCAACCTCTTCGTGTCCCGGGACCTTGGTGGCAGCTCTGCTGCTACAGAGGCAGTGGCCATTCTGACA
GCCACCTACCCCGTGGGTCATATGCCATATGGCTGGTTGACAGAAATCCGGGCTGTCTACCCTGCTTTTG
ACAAGAATAACCCCAGCAATAAACTGGCGAACACAAGCAACACGGTCACCTCAGCCCACATCAAGAAGTT
CACCTTTGTCTGCATGGCGCTGTCGCTGACGCTCTGTTTTGTCATGTTCTGGACCCCCAACGTCTCTGAG
AAGATTCTGATAGATATCATTGGAGTGGACTTTGCCTTTGCAGAACTCTGTGTCATTCCTCTGCGTATCT
TCTCCTTCTTCCCAGTGCCAGTGACTGTGAGAGCTCATCTCACTGGATGGCTGATGACACTGAAGAAAAC
CTTTGTGCTGGCGCCCAGCTCCGTGCTGCGCATCATCGTCCTCATCACCAGCCTTGTGGTCCTGCCGTAC
CTGGGGGTGCACGGAGCCACACTAGGTGTGGGCTCCCTTCTAGCAGGGTTTGTGGGAGAATCTACCATGG
TTGCCCTTGCAGCATGCTATGTCTATCGAAAACAGAAAAAGAAGATGGAGAATGAGTCAGCCACCGAGGG
AGAAGACTCGGCCATGACCGACATGCCTCCAACAGAGGAGGTCACAGACATCGTAGAGATGAGAGAAGAA
AATGAGTAA

Translation (492 aa):
MVKFPALTHYWPLIRFLVPLGITNIAIDFGEQALNRGIAAVKEDAVEMLASYGLAYSLMKFFTGPMSDFK
NVGLVFVNSKRDRAKAVLCMVVAGAIAAVFHTLIAYSDLGYYIINKLHHVDESVGSKTRRAFLYLAAFPF
MDAMAWTHAGILLKHKYSFLVGCASISDVIAQVVFVAILLHSHLECREPLLIPILSLYMGALVRCTTLCL
GYYRNIHDIIPDRSGPELGGDATIRKMLSFWWPLALILATQRISRPIVNLFVSRDLGGSSAATEAVAILT
ATYPVGHMPYGWLTEIRAVYPAFDKNNPSNKLANTSNTVTSAHIKKFTFVCMALSLTLCFVMFWTPNVSE
KILIDIIGVDFAFAELCVIPLRIFSFFPVPVTVRAHLTGWLMTLKKTFVLAPSSVLRIIVLITSLVVLPY
LGVHGATLGVGSLLAGFVGESTMVALAACYVYRKQKKKMENESATEGEDSAMTDMPPTEEVTDIVEMREE
NE


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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