NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS27350.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27350.1 Public Mus musculus 14 Pcca 23 108 98 CCDS HistoryNCBI Gene:110821Re-query CCDS DB by CCDS ID:27350.1Re-query CCDS DB by GeneID:110821See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27350.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000038374.12 ENSMUSP00000038763.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000038374.12Link to Ensembl Protein Viewer:ENSMUSP00000038763.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000038374Re-query CCDS DB by Protein ID:ENSMUSP00000038763
Original member NCBI NM_144844.2 NP_659093.2 Updated not alive Link to Nucleotide Sequence:NM_144844.2Link to Protein Sequence:NP_659093.2Re-query CCDS DB by Nucleotide ID:NM_144844Re-query CCDS DB by Protein ID:NP_659093
Current member NCBI NM_144844.3 NP_659093.2 Accepted alive Link to Nucleotide Sequence:NM_144844.3Link to Protein Sequence:NP_659093.2Re-query CCDS DB by Nucleotide ID:NM_144844Re-query CCDS DB by Protein ID:NP_659093Link to BLAST:NP_659093.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_659093.2 724 Q91ZA3 724 100% 0 0

Chromosomal Locations for CCDS 27350.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 122534367 122534459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 122557715 122557792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 122562779 122562826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 122562919 122562987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 122582617 122582730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 122585057 122585110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 122616754 122616885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 122638381 122638417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 122650252 122650330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 122658678 122658780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 122664254 122664348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 122668521 122668671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 122684882 122685025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 122686103 122686177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 122690099 122690167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 122692180 122692255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 122701055 122701165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 122714023 122714125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 122737902 122738004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 122790356 122790454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 122813194 122813247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 122876764 122876904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 122887047 122887124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 122889487 122889555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2175 nt):
ATGGCGGGGCAGTGGGTCAGGACCGTGGCGCTGTTGGCGGCCAGGCGGCATTGGCGGCGGTCCTCGCAGC
AGCAATTGCTGGGGACGCTGAAGCATGCTCCAGTCTATTCATACCAATGCCTAGTGGTGTCCAGAAGTCT
CAGTTCTGTGGAATATGAGCCTAAAGAAAAGACTTTTGATAAAATTCTCATTGCTAACAGAGGAGAAATT
GCCTGTAGGGTTATTAAAACTTGCAAGAAGATGGGCATCAAGACAGTTGCCATTCACAGTGATGTTGATG
CCAGTTCTGTTCACGTGAAAATGGCGGATGAGGCTGTCTGTGTTGGCCCAGCTCCCACCAGTAAAAGCTA
CCTCAACATGGATGCCATCATGGAAGCCATTAAGAAAACCAGGGCCCAAGCTGTACACCCAGGGTATGGA
TTCCTGTCAGAAAACAAAGAGTTTGCAAAGCGTCTGGCAGCAGAAGATGTCACTTTCATTGGACCTGATA
CTCATGCTATTCAAGCCATGGGTGACAAGATAGAAAGCAAACTATTAGCCAAGAGAGCAAAGGTCAACAC
AATCCCTGGTTTTGATGGGGTAGTAAAGGATGCAGATGAAGCTGTCAGAATTGCAAGGGAAATTGGCTAC
CCTGTGATGATCAAGGCCTCAGCAGGCGGTGGTGGGAAAGGCATGCGCATCGCCTGGGATGACGAAGAGA
CCAGGGATGGCTTTAGATTTTCATCCCAGGAAGCTGCTTCTAGTTTTGGTGATGATAGACTACTAATAGA
AAAATTTATCGATAACCCTCGTCATATAGAAATCCAGGTTTTAGGGGATAAACATGGCAATGCTCTGTGG
CTCAATGAGAGGGAGTGCTCGATCCAGAGAAGGAACCAGAAGGTGGTAGAGGAGGCGCCAAGCATTTTTC
TGGATCCTGAAACTCGCCAAGCAATGGGAGAGCAGGCCGTGGCTTTGGCTAAAGCCGTGAAGTATTCTTC
TGCTGGAACTGTGGAATTTCTTGTGGACTCCCAGAAGAATTTTTACTTCTTGGAGATGAATACAAGACTA
CAGGTCGAACATCCTGTCACAGAGTGCATTACTGGCCTGGACTTAGTCCAAGAAATGATCCTTGTTGCTA
AGGGTTACCCACTCAGGCACAAGCAAGAGGATATTCCCATCAGTGGCTGGGCAGTTGAATGTCGGGTTTA
TGCTGAGGACCCCTACAAGTCTTTCGGTTTACCGTCTATTGGGAGGCTGTCCCAGTACCAAGAGCCGATA
CATCTACCTGGTGTCCGAGTTGACAGTGGCATCCAACCAGGAAGTGACATCAGCATCTATTATGATCCTA
TGATTTCAAAGCTAGTCACATATGGGTCTGACAGAGCAGAAGCCCTGAAGAGGATGGAAGACGCACTGGA
CAATTATGTGATCCGGGGTGTTACACACAACATCCCATTGCTCCGGGAGGTGATAATCAACACACGTTTT
GTGAAAGGAGACATCAGCACTAAGTTTCTCTCTGATGTGTATCCTGATGGCTTCAAAGGGCACACGTTAA
CACTGAGTGAGAGAAACCAGTTATTGGCCATTGCATCATCTGTATTTGTGGCATCCCAGCTACGAGCTCA
GCGCTTCCAAGAACATTCAAGAGTACCAGTTATTAGGCCTGATGTGGCTAAGTGGGAGCTCTCGGTAAAG
TTACATGATGAAGATCATACTGTCGTGGCATCTAACAATGGGCCGGCATTTACCGTGGAAGTTGATGGCT
CGAAACTAAATGTGACCAGTACGTGGAACCTGGCGTCACCCTTATTGTCTGTCAACGTTGATGGCACGCA
GAGGACTGTGCAGTGTCTTTCTCGGGAAGCAGGTGGAAACATGAGCATCCAGTTTCTTGGCACAGTGTAC
AAAGTGCACATTTTAACCAAGCTTGCTGCAGAGCTGAACAAATTCATGCTTGAAAAAGTGCCCAAGGACA
CCAGCAGCACTCTGTGCTCCCCGATGCCTGGAGTGGTGGTGGCCGTTTCTGTCAAGCCTGGAGACATGGT
AGCAGAAGGTCAGGAAATCTGTGTGATTGAAGCTATGAAAATGCAGAACAGTATGACAGCTGGGAAAATG
GGCAAGGTGAAATTGGTGCACTGCAAAGCTGGAGACACAGTTGGTGAAGGAGACCTGCTTGTGGAGCTGG
AATGA

Translation (724 aa):
MAGQWVRTVALLAARRHWRRSSQQQLLGTLKHAPVYSYQCLVVSRSLSSVEYEPKEKTFDKILIANRGEI
ACRVIKTCKKMGIKTVAIHSDVDASSVHVKMADEAVCVGPAPTSKSYLNMDAIMEAIKKTRAQAVHPGYG
FLSENKEFAKRLAAEDVTFIGPDTHAIQAMGDKIESKLLAKRAKVNTIPGFDGVVKDADEAVRIAREIGY
PVMIKASAGGGGKGMRIAWDDEETRDGFRFSSQEAASSFGDDRLLIEKFIDNPRHIEIQVLGDKHGNALW
LNERECSIQRRNQKVVEEAPSIFLDPETRQAMGEQAVALAKAVKYSSAGTVEFLVDSQKNFYFLEMNTRL
QVEHPVTECITGLDLVQEMILVAKGYPLRHKQEDIPISGWAVECRVYAEDPYKSFGLPSIGRLSQYQEPI
HLPGVRVDSGIQPGSDISIYYDPMISKLVTYGSDRAEALKRMEDALDNYVIRGVTHNIPLLREVIINTRF
VKGDISTKFLSDVYPDGFKGHTLTLSERNQLLAIASSVFVASQLRAQRFQEHSRVPVIRPDVAKWELSVK
LHDEDHTVVASNNGPAFTVEVDGSKLNVTSTWNLASPLLSVNVDGTQRTVQCLSREAGGNMSIQFLGTVY
KVHILTKLAAELNKFMLEKVPKDTSSTLCSPMPGVVVAVSVKPGDMVAEGQEICVIEAMKMQNSMTAGKM
GKVKLVHCKAGDTVGEGDLLVELE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH