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Report for CCDS27087.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27087.1 Public Mus musculus 14 Slc7a7 23 108 98 CCDS HistoryNCBI Gene:20540Re-query CCDS DB by CCDS ID:27087.1Re-query CCDS DB by GeneID:20540See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27087.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000000984.8 ENSMUSP00000000984.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000000984.8Link to Ensembl Protein Viewer:ENSMUSP00000000984.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000000984Re-query CCDS DB by Protein ID:ENSMUSP00000000984
Original member Current member EBI ENSMUST00000195970.4 ENSMUSP00000143091.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000195970.4Link to Ensembl Protein Viewer:ENSMUSP00000143091.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000195970Re-query CCDS DB by Protein ID:ENSMUSP00000143091
Original member Current member EBI ENSMUST00000197440.4 ENSMUSP00000143743.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000197440.4Link to Ensembl Protein Viewer:ENSMUSP00000143743.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000197440Re-query CCDS DB by Protein ID:ENSMUSP00000143743
Original member Current member EBI ENSMUST00000226753.1 ENSMUSP00000154533.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000226753.1Link to Ensembl Protein Viewer:ENSMUSP00000154533.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000226753Re-query CCDS DB by Protein ID:ENSMUSP00000154533
Original member Current member NCBI NM_001253679.1 NP_001240608.1 Accepted alive Link to Nucleotide Sequence:NM_001253679.1Link to Protein Sequence:NP_001240608.1Re-query CCDS DB by Nucleotide ID:NM_001253679Re-query CCDS DB by Protein ID:NP_001240608Link to BLAST:NP_001240608.1
Original member Current member NCBI NM_001253680.1 NP_001240609.1 Accepted alive Link to Nucleotide Sequence:NM_001253680.1Link to Protein Sequence:NP_001240609.1Re-query CCDS DB by Nucleotide ID:NM_001253680Re-query CCDS DB by Protein ID:NP_001240609Link to BLAST:NP_001240609.1
Original member Current member NCBI NM_011405.4 NP_035535.2 Accepted alive Link to Nucleotide Sequence:NM_011405.4Link to Protein Sequence:NP_035535.2Re-query CCDS DB by Nucleotide ID:NM_011405Re-query CCDS DB by Protein ID:NP_035535Link to BLAST:NP_035535.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001240608.1 510 Q9Z1K8 510 100% 0 0
NP_001240609.1 510 Q9Z1K8 510 100% 0 0
NP_035535.2 510 Q9Z1K8 510 100% 0 0

Chromosomal Locations for CCDS 27087.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 54369786 54369886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 54370093 54370276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 54372940 54373089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 54373842 54373938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 54374214 54374317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 54374548 54374671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 54377766 54377910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 54378996 54379121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 54408503 54409004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1533 nt):
ATGGTCAACAGCACCAAGTATGAAGTGGCTGCTCAGCACGAGGCCGACGATGGCTCTGCTCTCGGGGATG
GGGCCAGCCCAGTGGCGGAGCAGGTCAAACTGAAGAAGGAGATCTCCCTGCTTAATGGCGTGTGTCTCAT
AGTGGGGAACATGATCGGCTCCGGCATCTTTGTCTCCCCTAAGGGTGTGCTCATGTACAGTGCCTCTTTT
GGCCTCTCACTGGTCATCTGGGCTGTCGGGGGCATTTTCTCCGTCTTTGGGGCCCTTTGTTACGCTGAAC
TGGGTACCACCATTAAGAAATCCGGGGCCAGCTATGCTTATATCCTGGAGGCCTTCGGGGGATTCCTTGC
GTTCATCCGCCTCTGGACTTCTCTGCTCATCATTGAACCCACCAGCCAGGCCGTCATTGCCATCACCTTT
GCCAACTACATGGTGCAGCCCCTCTTCCCGAGCTGTGGCGCTCCCTATGCCGCCGGCCGCCTGCTGGCCG
CTGCCTGCATCTGTCTCTTAACCTTCATTAACTGTGCCTATGTCAAGTGGGGAACCCTGGTCCAAGATAT
TTTCACCTATGCTAAGGTGTTGGCGCTGATTGCAGTCATCATTGCAGGCATTGTTAGACTTGGCCAGGGA
GCCACAGCTAACTTTGAGAACTCCTTTGAGGGCTCATCCTTTGCAATGGGTGACATTGCTCTGGCACTCT
ACTCAGCCCTGTTCTCCTACTCGGGCTGGGACACCCTTAACTATGTCACCGAAGAGATCAGGAACCCCGA
GAGGAACTTGCCCCTCTCCATTGGCATTTCCATGCCAATCGTCACCATCATCTACCTCTTGACCAATGTG
GCCTATTACAGTGTGCTAGACATAAAGGAAATCCTGGCCAGTGACGCTGTTGCCGTGACCTTTGCAGATC
AAATTTTTGGAGTATTCAATTGGATAATTCCAGTAGCGGTTGCATTCTCTTGCTTTGGTGGGCTCAACGC
CTCCATCGTGGCTGCTTCCAGGCTTTTATTTGTGGGCTCGAGAGAAGGCCACCTCCCTGACGCCATCTGT
ATGGTTCATGTTGAACGGTTCACACCAGTGCCTTCTCTACTCTTCAATGGTGTGTTGTCCCTGGTCTACC
TGTGCGTGGAGGACATCTTCCAGCTCATTAACTACTATAGCTTCAGCTACTGGTTCTTTGTGGGCCTTTC
TATTGTGGGTCAGCTTTATCTACGCTGGAAGGACCCCGACCGGCCTCGCCCTCTCAAGCTCAGCCTTTTC
TTCCCCATCATCTTCTGCCTCTGCACCATCTTCCTGGTGGCTGTTCCACTTTACAGCGACACCATCAACT
CCCTCATCGGCATTGGCATTGCACTCTCAGGCCTGCCCTTCTACTTCTTCATCATCAGAGTGCCAGAGCA
CAAACGACCACTGTTCCTCCGCAGGATTGTAGCCTCTATCACACGGTACCTCCAGATCCTCTGTATGTCA
GTTGCTGCAGAAATGGACTTGGAAGATGGAGAGTTGTCCAAACAAGATCCCAAGTCTAAATAG

Translation (510 aa):
MVNSTKYEVAAQHEADDGSALGDGASPVAEQVKLKKEISLLNGVCLIVGNMIGSGIFVSPKGVLMYSASF
GLSLVIWAVGGIFSVFGALCYAELGTTIKKSGASYAYILEAFGGFLAFIRLWTSLLIIEPTSQAVIAITF
ANYMVQPLFPSCGAPYAAGRLLAAACICLLTFINCAYVKWGTLVQDIFTYAKVLALIAVIIAGIVRLGQG
ATANFENSFEGSSFAMGDIALALYSALFSYSGWDTLNYVTEEIRNPERNLPLSIGISMPIVTIIYLLTNV
AYYSVLDIKEILASDAVAVTFADQIFGVFNWIIPVAVAFSCFGGLNASIVAASRLLFVGSREGHLPDAIC
MVHVERFTPVPSLLFNGVLSLVYLCVEDIFQLINYYSFSYWFFVGLSIVGQLYLRWKDPDRPRPLKLSLF
FPIIFCLCTIFLVAVPLYSDTINSLIGIGIALSGLPFYFFIIRVPEHKRPLFLRRIVASITRYLQILCMS
VAAEMDLEDGELSKQDPKSK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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