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Report for CCDS27047.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27047.1 Public Mus musculus 14 Ndrg2 23 108 98 CCDS HistoryNCBI Gene:29811Re-query CCDS DB by CCDS ID:27047.1Re-query CCDS DB by GeneID:29811See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27047.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000004673.14 ENSMUSP00000004673.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000004673.14Link to Ensembl Protein Viewer:ENSMUSP00000004673.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000004673Re-query CCDS DB by Protein ID:ENSMUSP00000004673
Original member NCBI NM_001360265.1 NP_001347194.1 Updated not alive Link to Nucleotide Sequence:NM_001360265.1Link to Protein Sequence:NP_001347194.1Re-query CCDS DB by Nucleotide ID:NM_001360265Re-query CCDS DB by Protein ID:NP_001347194
Current member NCBI NM_001360265.2 NP_001347194.1 Accepted alive Link to Nucleotide Sequence:NM_001360265.2Link to Protein Sequence:NP_001347194.1Re-query CCDS DB by Nucleotide ID:NM_001360265Re-query CCDS DB by Protein ID:NP_001347194Link to BLAST:NP_001347194.1
Original member NCBI NM_001360266.1 NP_001347195.1 Updated not alive Link to Nucleotide Sequence:NM_001360266.1Link to Protein Sequence:NP_001347195.1Re-query CCDS DB by Nucleotide ID:NM_001360266Re-query CCDS DB by Protein ID:NP_001347195
Current member NCBI NM_001360266.2 NP_001347195.1 Accepted alive Link to Nucleotide Sequence:NM_001360266.2Link to Protein Sequence:NP_001347195.1Re-query CCDS DB by Nucleotide ID:NM_001360266Re-query CCDS DB by Protein ID:NP_001347195Link to BLAST:NP_001347195.1
Original member NCBI NM_001360267.1 NP_001347196.1 Updated not alive Link to Nucleotide Sequence:NM_001360267.1Link to Protein Sequence:NP_001347196.1Re-query CCDS DB by Nucleotide ID:NM_001360267Re-query CCDS DB by Protein ID:NP_001347196
Current member NCBI NM_001360267.2 NP_001347196.1 Accepted alive Link to Nucleotide Sequence:NM_001360267.2Link to Protein Sequence:NP_001347196.1Re-query CCDS DB by Nucleotide ID:NM_001360267Re-query CCDS DB by Protein ID:NP_001347196Link to BLAST:NP_001347196.1
Original member NCBI NM_001360268.1 NP_001347197.1 Updated not alive Link to Nucleotide Sequence:NM_001360268.1Link to Protein Sequence:NP_001347197.1Re-query CCDS DB by Nucleotide ID:NM_001360268Re-query CCDS DB by Protein ID:NP_001347197
Current member NCBI NM_001360268.2 NP_001347197.1 Accepted alive Link to Nucleotide Sequence:NM_001360268.2Link to Protein Sequence:NP_001347197.1Re-query CCDS DB by Nucleotide ID:NM_001360268Re-query CCDS DB by Protein ID:NP_001347197Link to BLAST:NP_001347197.1
Original member NCBI NM_001360269.1 NP_001347198.1 Updated not alive Link to Nucleotide Sequence:NM_001360269.1Link to Protein Sequence:NP_001347198.1Re-query CCDS DB by Nucleotide ID:NM_001360269Re-query CCDS DB by Protein ID:NP_001347198
Current member NCBI NM_001360269.2 NP_001347198.1 Accepted alive Link to Nucleotide Sequence:NM_001360269.2Link to Protein Sequence:NP_001347198.1Re-query CCDS DB by Nucleotide ID:NM_001360269Re-query CCDS DB by Protein ID:NP_001347198Link to BLAST:NP_001347198.1
Original member NCBI NM_013864.2 NP_038892.1 Updated not alive Link to Nucleotide Sequence:NM_013864.2Link to Protein Sequence:NP_038892.1Re-query CCDS DB by Nucleotide ID:NM_013864Re-query CCDS DB by Protein ID:NP_038892
Current member NCBI NM_013864.3 NP_038892.1 Accepted alive Link to Nucleotide Sequence:NM_013864.3Link to Protein Sequence:NP_038892.1Re-query CCDS DB by Nucleotide ID:NM_013864Re-query CCDS DB by Protein ID:NP_038892Link to BLAST:NP_038892.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001347194.1 371 Q9QYG0-1 371 100% 0 0
NP_001347195.1 371 Q9QYG0-1 371 100% 0 0
NP_001347196.1 371 Q9QYG0-1 371 100% 0 0
NP_001347197.1 371 Q9QYG0-1 371 100% 0 0
NP_001347198.1 371 Q9QYG0-1 371 100% 0 0
NP_038892.1 371 Q9QYG0-1 371 100% 0 0

Chromosomal Locations for CCDS 27047.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 51906140 51906306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 51906513 51906564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 51906690 51906725 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 51906949 51906996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 51907246 51907297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 51907585 51907629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 51908068 51908171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 51908330 51908386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 51908568 51908654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 51908874 51908934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 51910058 51910120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 51910315 51910435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 51910680 51910785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 51911086 51911127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 51911466 51911540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1116 nt):
ATGGCAGAACTTCAGGAGGTGCAGATCACCGAGGAGAAGCCGCTGTTGCCAGGACAAACACCCGAGACTG
CCAAGGAGGCCGAGTTAGCTGCCCGCATCCTCCTGGACCAGGGACAGACTCACTCTGTGGAGACACCTTA
TGGCTCGGTCACTTTTACTGTGTATGGCACCCCCAAACCCAAACGCCCGGCGATATTCACCTACCATGAT
GTAGGCCTCAACTATAAGTCTTGCTTCCAGCCACTGTTTCGGTTCGGGGATATGCAAGAGATCATACAGA
ACTTCGTGCGGGTTCATGTGGATGCCCCTGGCATGGAAGAGGGGGCGCCTGTGTTTCCTCTGGGATATCA
GTACCCATCTCTGGACCAGCTTGCTGACATGATTCCTTGCATCCTGCAGTACCTAAATTTCTCTACAATA
ATTGGAGTTGGTGTTGGAGCCGGAGCCTACATTCTGTCGCGATATGCTCTGAACCACCCGGACACAGTTG
AAGGTCTTGTTCTCATCAACATTGATCCCAATGCCAAGGGCTGGATGGACTGGGCAGCCCACAAGTTAAC
TGGCCTTACGTCTTCCATTCCGGACATGATTCTTGGACATCTTTTCAGCCAGGAAGAGCTTTCTGGAAAT
TCTGAATTGATACAAAAGTACAGAGGTATCATCCAACACGCACCCAACCTGGAGAACATTGAACTCTACT
GGAATAGCTACAACAACCGCCGAGACCTGAACTTTGAGCGAGGTGGTGAGACGACCCTCAAGTGCCCTGT
GATGCTGGTGGTTGGAGACCAAGCACCTCATGAAGATGCCGTGGTGGAATGTAACTCAAAGCTGGACCCC
ACACAGACCTCGTTCCTCAAGATGGCCGACTCTGGAGGTCAGCCACAGCTGACTCAGCCCGGCAAGCTGA
CAGAGGCTTTCAAGTACTTCCTGCAAGGCATGGGCTACATGGCCTCTTCCTGCATGACTCGCCTATCTCG
GTCTCGCACAGCATCTCTGACCAGTGCAGCATCCATCGATGGCAGTCGGTCCCGATCCCGCACCCTGTCG
CAGAGTAGCGAGTCTGGGACTCTCCCTTCTGGACCCCCAGGGCACACCATGGAAGTCTCCTGTTGA

Translation (371 aa):
MAELQEVQITEEKPLLPGQTPETAKEAELAARILLDQGQTHSVETPYGSVTFTVYGTPKPKRPAIFTYHD
VGLNYKSCFQPLFRFGDMQEIIQNFVRVHVDAPGMEEGAPVFPLGYQYPSLDQLADMIPCILQYLNFSTI
IGVGVGAGAYILSRYALNHPDTVEGLVLINIDPNAKGWMDWAAHKLTGLTSSIPDMILGHLFSQEELSGN
SELIQKYRGIIQHAPNLENIELYWNSYNNRRDLNFERGGETTLKCPVMLVVGDQAPHEDAVVECNSKLDP
TQTSFLKMADSGGQPQLTQPGKLTEAFKYFLQGMGYMASSCMTRLSRSRTASLTSAASIDGSRSRSRTLS
QSSESGTLPSGPPGHTMEVSC


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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